RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 RSG1Q9BU20 258 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 AUNIPQ9H7T9 357 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 SLC25A22Q9H936 323 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 IFT46Q9NQC8 304 aa4.26□□□□□ -1.73
LIMA1-204ENST00000549064 TRGV2A0A075B6R0 118 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 IGKV1D-37A0A075B6S9 117 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 H7BYZ3 331 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 ZNF324O75467 553 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-204ENST00000549064 IGHV3-53P01767 116 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 OR5AC1P0C628 307 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 MEOX2P50222 304 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 NDUFV3P56181 108 aaKnown RBP4.25□□□□□ -1.73
LIMA1-204ENST00000549064 RPL37AP61513 92 aaKnown RBP4.25□□□□□ -1.73
LIMA1-204ENST00000549064 LINC01561Q8N1V8 128 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 ZNF738Q8NE65 137 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 OR4D5Q8NGN0 318 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 OR5H2Q8NGV7 314 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 RNASEH2CQ8TDP1 164 aaKnown RBP4.25□□□□□ -1.73
LIMA1-204ENST00000549064 CHAC1Q9BUX1 264 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 RPH3ALQ9UNE2 315 aa4.25□□□□□ -1.73
LIMA1-204ENST00000549064 TRDV1A0A1B0GX56 115 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 ZFP92A6NM28 416 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 LECT2O14960 151 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 CCNKO75909 580 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 ATP5HO75947 161 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 GATA2P23769 480 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-204ENST00000549064 S100GP29377 79 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 CDKN1BP46527 198 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 GALR1P47211 349 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 SEC61GP60059 68 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 SRPXP78539 464 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 ZFP69Q49AA0 526 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 IDNKQ5T6J7 187 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 LELP1Q5T871 98 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 SAMD13Q5VXD3 122 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 NEGR1Q7Z3B1 354 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 OR8A1Q8NGG7 326 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 TP53RKQ96S44 253 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 PARLQ9H300 379 aa4.24□□□□□ -1.73
LIMA1-204ENST00000549064 RCL1Q9Y2P8 373 aaKnown RBP4.24□□□□□ -1.73
LIMA1-204ENST00000549064 TRGV1A0A0A0MS02 117 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 IFITM10A6NMD0 228 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 HLA-DMAP28067 261 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 HRH1P35367 487 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 ATP5IP56385 69 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-204ENST00000549064 SPCS3P61009 180 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 MRPL23Q16540 153 aaKnown RBP4.23□□□□□ -1.73
LIMA1-204ENST00000549064 PSG3Q16557 428 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 SP6Q3SY56 376 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 LCE1DQ5T752 114 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 GFI1BQ5VTD9 330 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 C10orf126Q8N4M7 172 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 LITAFQ99732 161 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 NDUFB11Q9NX14 153 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 SCN3BQ9NY72 215 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 ANAPC10Q9UM13 185 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 FUT9Q9Y231 359 aa4.23□□□□□ -1.73
LIMA1-204ENST00000549064 LPAP08519 4548 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 PCP4L1A6NKN8 68 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 CEBPZOSA8MTT3 80 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 SNRPGP15A8MWD9 76 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 K7EP13 123 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 PGAM2P15259 253 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 CRYBA4P53673 196 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 TAS2R46P59540 309 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 TSPAN5P62079 268 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 MXD1Q05195 221 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 DAZ2Q13117 558 aaKnown RBP4.22□□□□□ -1.73
LIMA1-204ENST00000549064 TRIM16LQ309B1 348 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 NMSQ5H8A3 153 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 LINC00242Q5T6M2 205 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 LPCAT3Q6P1A2 487 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 PACRGLQ8N7B6 248 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 OR52E5Q8NH55 327 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 RNASE11Q8TAA1 199 aaKnown RBP4.22□□□□□ -1.73
LIMA1-204ENST00000549064 DUSP21Q9H596 190 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 PRO0255Q9UI72 69 aa4.22□□□□□ -1.73
LIMA1-204ENST00000549064 A0A0A6YYH2 397 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 TRAV5A0A0B4J249 113 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 TRAV12-3A0A0B4J271 114 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 TRBV7-9A0A0J9YWB2 115 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 FAM240BA0A1B0GVZ2 78 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 A6NJ64 397 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 IBA57-AS1B1ANH7 110 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 CXCL3P19876 107 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 SRIP30626 198 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 PIGPP57054 158 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 C11orf72Q8NBR9 251 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 C20orf144Q9BQM9 153 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 OCR1Q9BZK8 76 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 DIABLOQ9NR28 239 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-204ENST00000549064 TXNL4BQ9NX01 149 aaKnown RBP4.21□□□□□ -1.74
LIMA1-204ENST00000549064 TPRKBQ9Y3C4 175 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 KLF12Q9Y4X4 402 aa4.21□□□□□ -1.74
LIMA1-204ENST00000549064 MUC2Q02817 5179 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 IGKV1OR2-108A0A075B7D4 117 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 C3orf85A0A1B0GTC6 90 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 LINC00854A0A1B0GVQ3 168 aa4.2□□□□□ -1.74
LIMA1-204ENST00000549064 IGHV3-30P01768 117 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms