RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 SERTAD4Q9NUC0 356 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 AURKAIP1Q9NWT8 199 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-239ENST00000545694 S4R3C0 116 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 NOTCH2Q04721 2471 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 HIVEP2P31629 2446 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 MTORP42345 2549 aa4.75□□□□□ -1.65
SYNE1-239ENST00000545694 TRAV34A0A0B4J273 112 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 LGALS9O00182 355 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 SLC17A3O00476 420 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 HOXA3O43365 443 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-239ENST00000545694 LGALS1P09382 135 aaKnown RBP4.74□□□□□ -1.65
SYNE1-239ENST00000545694 TRGC1P0CF51 173 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 SNRPEP62304 92 aaKnown RBP4.74□□□□□ -1.65
SYNE1-239ENST00000545694 FABP9Q0Z7S8 132 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 FAM162BQ5T6X4 162 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 LCN12Q6JVE5 192 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 RBPMS2Q6ZRY4 209 aaKnown RBP4.74□□□□□ -1.65
SYNE1-239ENST00000545694 ZFP82Q8N141 532 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 Q8N1X5 172 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 GLMPQ8WWB7 406 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 FRZBQ92765 325 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 LINC00479Q96M42 142 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 NOL4LQ96MY1 436 aaPredicted RBP4.74□□□□□ -1.65
SYNE1-239ENST00000545694 RNASE7Q9H1E1 156 aaKnown RBP4.74□□□□□ -1.65
SYNE1-239ENST00000545694 ZNF702PQ9H963 129 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 SMAD5-AS1Q9Y6J3 95 aa4.74□□□□□ -1.65
SYNE1-239ENST00000545694 IGHV7-4-1A0A0J9YVY3 117 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 A8MWP6 167 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 OVOL1O14753 267 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 CHEK1O14757 476 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 SLPIP03973 132 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 SMIM6P0DI80 62 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 S100A2P29034 98 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 ID1P41134 155 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 SMUG1Q53HV7 270 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 PRR31Q5SQ13 230 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 C9orf47Q6ZRZ4 202 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 PRNTQ86SH4 94 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 MAPK1IP1LQ8NDC0 245 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 WFDC11Q8NEX6 87 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 LINC00477Q96M19 166 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 PACRGQ96M98 296 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-239ENST00000545694 C17orf77Q96MU5 243 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 PRR25Q96S07 402 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 ASCL2Q99929 193 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 KLK15Q9H2R5 256 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 NRN1Q9NPD7 142 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 LINC00527Q9UJ94 153 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 RPH3ALQ9UNE2 315 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 CSMD2Q7Z408 3487 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 HECTD1Q9ULT8 2610 aa4.73□□□□□ -1.65
SYNE1-239ENST00000545694 ZFHX3Q15911 3703 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 FABP5P3A8MUU1 101 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 HIGD1CA8MV81 97 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 H3BTX0 84 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 M0R3E3 92 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 NDUFA6P56556 154 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 HBBP68871 147 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 HIST1H1AQ02539 215 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-239ENST00000545694 Q0VG73 95 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 RIGQ13278 110 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 OR10J3Q5JRS4 329 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 DNLZQ5SXM8 178 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 TMEM78Q5T7P6 136 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 PRR27Q6MZM9 219 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 SIGLECL1Q8N7X8 197 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 NUP35Q8NFH5 326 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 BORCS7Q96B45 105 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 C16orf92Q96LL3 132 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 NEU1Q99519 415 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 SMPXQ9UHP9 88 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 AKAP9Q99996 3911 aa4.72□□□□□ -1.65
SYNE1-239ENST00000545694 CSMD1Q96PZ7 3565 aa4.71□□□□□ -1.65
SYNE1-239ENST00000545694 ZNF469Q96JG9 3925 aaPredicted RBP4.71□□□□□ -1.65
SYNE1-239ENST00000545694 NF1P21359 2839 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 TRAV8-1A0A0A6YYK1 113 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 TRAV2A0A0B4J234 112 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV3-35A0A0C4DH35 117 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 A0A1B0GXF2 115 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 SNURFLB1AK76 121 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 M0QZ24 198 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 IGHV3-11P01762 117 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 SNRPCP09234 159 aaKnown RBP4.71□□□□□ -1.66
SYNE1-239ENST00000545694 ESDP10768 282 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 AKR1D1P51857 326 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 ZNF138P52744 262 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 PAFAH1B2P68402 229 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 TMEM136Q6ZRR5 245 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 LINC00518Q8N0U6 118 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 HIST3H2BBQ8N257 126 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 GATD1Q8NB37 220 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 NHLRC2Q8NBF2 726 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 OR2D3Q8NGH3 330 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 OR10J6PQ8NGY7 276 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 ZNF418Q8TF45 676 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-239ENST00000545694 TMEM18Q96B42 140 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 ZC2HC1AQ96GY0 325 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 RHPN1-AS1Q9BWJ2 59 aa4.71□□□□□ -1.66
SYNE1-239ENST00000545694 PEMTQ9UBM1 199 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms