RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 GFI1BQ5VTD9 330 aa13.74□□□□□ -0.21
DDX55-211ENST00000544429 TMEM256Q8N2U0 113 aa13.74□□□□□ -0.21
DDX55-211ENST00000544429 RXFP4Q8TDU9 374 aa13.74□□□□□ -0.21
DDX55-211ENST00000544429 PPP1R14DQ9NXH3 145 aa13.74□□□□□ -0.21
DDX55-211ENST00000544429 IGHV3OR16-12A0A075B7B8 117 aa13.73□□□□□ -0.21
DDX55-211ENST00000544429 TRBV7-9A0A0J9YWB2 115 aa13.73□□□□□ -0.21
DDX55-211ENST00000544429 PGPA6NDG6 321 aa13.73□□□□□ -0.21
DDX55-211ENST00000544429 UMAD1C9J7I0 102 aa13.73□□□□□ -0.21
DDX55-211ENST00000544429 PFDN1O60925 122 aa13.73□□□□□ -0.21
DDX55-211ENST00000544429 LEPP41159 167 aa13.73□□□□□ -0.21
DDX55-211ENST00000544429 EIF5AP63241 154 aaKnown RBP13.73□□□□□ -0.21
DDX55-211ENST00000544429 ZNF492Q9P255 531 aa13.73□□□□□ -0.21
DDX55-211ENST00000544429 DYNC2H1Q8NCM8 4307 aaKnown RBP13.73□□□□□ -0.21
DDX55-211ENST00000544429 TENM2Q9NT68 2774 aa13.72□□□□□ -0.21
DDX55-211ENST00000544429 TPT1P13693 172 aaKnown RBP13.72□□□□□ -0.21
DDX55-211ENST00000544429 CSN1S1P47710 185 aa13.72□□□□□ -0.21
DDX55-211ENST00000544429 FHITP49789 147 aa13.72□□□□□ -0.21
DDX55-211ENST00000544429 ZFAND6Q6FIF0 208 aa13.72□□□□□ -0.21
DDX55-211ENST00000544429 ZFAND2AQ8N6M9 145 aa13.72□□□□□ -0.21
DDX55-211ENST00000544429 C11orf45Q8TAV5 145 aa13.72□□□□□ -0.21
DDX55-211ENST00000544429 TMEM189A5PLL7 270 aa13.71□□□□□ -0.21
DDX55-211ENST00000544429 HBE1P02100 147 aa13.71□□□□□ -0.21
DDX55-211ENST00000544429 FAM74A1Q5RGS3 127 aa13.71□□□□□ -0.21
DDX55-211ENST00000544429 TMEM78Q5T7P6 136 aa13.71□□□□□ -0.21
DDX55-211ENST00000544429 C9orf62Q8N4C0 152 aa13.71□□□□□ -0.21
DDX55-211ENST00000544429 TMED6Q8WW62 240 aa13.71□□□□□ -0.21
DDX55-211ENST00000544429 A0A1W2PRE2 83 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 GGTLC3B5MD39 225 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 PRM2P04554 102 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 ZNF138P52744 262 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 TAS2R60P59551 318 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 RRN3P1Q2M238 152 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 DPPA3Q6W0C5 159 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 MBD3L1Q8WWY6 194 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 TMEM208Q9BTX3 173 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 CELA1Q9UNI1 258 aa13.7□□□□□ -0.22
DDX55-211ENST00000544429 KMT2CQ8NEZ4 4911 aaKnown RBP13.7□□□□□ -0.22
DDX55-211ENST00000544429 LOC102723971A0A1B0GUV8 181 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 PLAC8L1A1L4L8 177 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 MAP1LC3B2A6NCE7 125 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 H7BYZ3 331 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 ZNF324O75467 553 aaPredicted RBP13.69□□□□□ -0.22
DDX55-211ENST00000544429 NANOS2P60321 138 aaKnown RBP13.69□□□□□ -0.22
DDX55-211ENST00000544429 C5orf17Q8NAS9 161 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 CMTM2Q8TAZ6 248 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 MAP1LC3BQ9GZQ8 125 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 TMPRSS5Q9H3S3 457 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 LENEPQ9Y5L5 61 aa13.69□□□□□ -0.22
DDX55-211ENST00000544429 ZNF705GA8MUZ8 300 aaPredicted RBP13.68□□□□□ -0.22
DDX55-211ENST00000544429 AZU1P20160 251 aa13.68□□□□□ -0.22
DDX55-211ENST00000544429 FGF8P55075 233 aaPredicted RBP13.68□□□□□ -0.22
DDX55-211ENST00000544429 PRR9Q5T870 116 aa13.68□□□□□ -0.22
DDX55-211ENST00000544429 SLC51BQ86UW2 128 aa13.68□□□□□ -0.22
DDX55-211ENST00000544429 Q8TAT8 98 aa13.68□□□□□ -0.22
DDX55-211ENST00000544429 YTHDF2Q9Y5A9 579 aaKnown RBP13.68□□□□□ -0.22
DDX55-211ENST00000544429 SERTM2A0A1B0GWG4 89 aa13.67□□□□□ -0.22
DDX55-211ENST00000544429 C7orf71A4D174 169 aa13.67□□□□□ -0.22
DDX55-211ENST00000544429 SUMO1P63165 101 aaKnown RBP13.67□□□□□ -0.22
DDX55-211ENST00000544429 GNG5P63218 68 aa13.67□□□□□ -0.22
DDX55-211ENST00000544429 ZFP69Q49AA0 526 aa13.67□□□□□ -0.22
DDX55-211ENST00000544429 RNASE8Q8TDE3 154 aaKnown RBP13.67□□□□□ -0.22
DDX55-211ENST00000544429 LINC01587Q99440 93 aa13.67□□□□□ -0.22
DDX55-211ENST00000544429 LINC00467Q9BRT7 94 aa13.67□□□□□ -0.22
DDX55-211ENST00000544429 DKK2Q9UBU2 259 aa13.67□□□□□ -0.22
DDX55-211ENST00000544429 TRAV12-3A0A0B4J271 114 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 CXorf65A6NEN9 183 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 FAM74A7A6NL05 159 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 TCRAP04437 139 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 BTN1A1Q13410 526 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 PMS2P11Q13670 270 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 C12orf74Q32Q52 190 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 CEMP1Q6PRD7 247 aaPredicted RBP13.66□□□□□ -0.22
DDX55-211ENST00000544429 GOLT1AQ6ZVE7 132 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 FAM213BQ8TBF2 198 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 PHLDA1Q8WV24 401 aaPredicted RBP13.66□□□□□ -0.22
DDX55-211ENST00000544429 EPDR1Q9UM22 224 aa13.66□□□□□ -0.22
DDX55-211ENST00000544429 NUPR2A6NF83 97 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 J3KRW8 73 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 IGLV2-11P01706 119 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 SPART-AS1P0CW21 52 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 CCDC28AQ8IWP9 274 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 IQCF2Q8IXL9 164 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 TMEM263Q8WUH6 116 aaKnown RBP13.65□□□□□ -0.22
DDX55-211ENST00000544429 TVP23CQ96ET8 276 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 PYGO2Q9BRQ0 406 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 ARL2-SNX15V9GYD0 113 aa13.65□□□□□ -0.22
DDX55-211ENST00000544429 TRAV8-1A0A0A6YYK1 113 aa13.64□□□□□ -0.23
DDX55-211ENST00000544429 GPX1P07203 203 aa13.64□□□□□ -0.23
DDX55-211ENST00000544429 RAB5CP51148 216 aa13.64□□□□□ -0.23
DDX55-211ENST00000544429 FAM222AQ5U5X8 452 aa13.64□□□□□ -0.23
DDX55-211ENST00000544429 EIF5AL1Q6IS14 154 aaKnown RBP13.64□□□□□ -0.23
DDX55-211ENST00000544429 ZNF493Q6ZR52 646 aa13.64□□□□□ -0.23
DDX55-211ENST00000544429 C16orf74Q96GX8 76 aa13.64□□□□□ -0.23
DDX55-211ENST00000544429 NIPSNAP3BQ9BS92 247 aa13.64□□□□□ -0.23
DDX55-211ENST00000544429 NKX6-2Q9C056 277 aaPredicted RBP13.64□□□□□ -0.23
DDX55-211ENST00000544429 TEX48A0A1B0GUV7 120 aa13.63□□□□□ -0.23
DDX55-211ENST00000544429 RNASE4P34096 147 aaKnown RBP13.63□□□□□ -0.23
DDX55-211ENST00000544429 SULT1A2P50226 295 aa13.63□□□□□ -0.23
DDX55-211ENST00000544429 EMP1P54849 157 aa13.63□□□□□ -0.23
DDX55-211ENST00000544429 Q6ZQT7 251 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms