RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 NEGR1Q7Z3B1 354 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 C8orf49Q96NF6 230 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 VGLL1Q99990 258 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 RBM38Q9H0Z9 239 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 HHLA3Q9XRX5 114 aa12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 RCL1Q9Y2P8 373 aaKnown RBP12.01□□□□□ -0.49
CLSTN3-214ENST00000542663 J3QL48 77 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 ZNF253O75346 499 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 OR4E1P0C645 316 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 RNASE4P34096 147 aaKnown RBP12□□□□□ -0.49
CLSTN3-214ENST00000542663 TAS2R30P59541 319 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 DEDD2Q8WXF8 326 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 MRPL53Q96EL3 112 aaKnown RBP12□□□□□ -0.49
CLSTN3-214ENST00000542663 TMEM70Q9BUB7 260 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 GGACTQ9BVM4 153 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 AGPAT4-IT1Q9H0P7 198 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 DNAJC4Q9NNZ3 241 aa12□□□□□ -0.49
CLSTN3-214ENST00000542663 K7EP13 123 aa11.99□□□□□ -0.49
CLSTN3-214ENST00000542663 MPDU1O75352 247 aa11.99□□□□□ -0.49
CLSTN3-214ENST00000542663 SCGB1D2O95969 90 aa11.99□□□□□ -0.49
CLSTN3-214ENST00000542663 PRR9Q5T870 116 aa11.99□□□□□ -0.49
CLSTN3-214ENST00000542663 C7orf66A4D0T2 115 aa11.98□□□□□ -0.49
CLSTN3-214ENST00000542663 K7EQD1 137 aa11.98□□□□□ -0.49
CLSTN3-214ENST00000542663 NDUFB4O95168 129 aa11.98□□□□□ -0.49
CLSTN3-214ENST00000542663 CRISP2P16562 243 aa11.98□□□□□ -0.49
CLSTN3-214ENST00000542663 SLAQ13239 276 aa11.98□□□□□ -0.49
CLSTN3-214ENST00000542663 MIC13Q5XKP0 118 aa11.98□□□□□ -0.49
CLSTN3-214ENST00000542663 LINC00477Q96M19 166 aa11.98□□□□□ -0.49
CLSTN3-214ENST00000542663 MRPL32Q9BYC8 188 aaKnown RBP11.98□□□□□ -0.49
CLSTN3-214ENST00000542663 TRBV19A0A075B6N1 114 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 IGLV5-52A0A0A0MRZ9 124 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 LRCOL1A6NCL2 159 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 GPX1P07203 203 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 EVI2AP22794 236 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 CAMLGP49069 296 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 IAH1Q2TAA2 248 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 NRARPQ7Z6K4 114 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 ZFAND2AQ8N6M9 145 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 FLVCR2Q9UPI3 526 aa11.97□□□□□ -0.49
CLSTN3-214ENST00000542663 E5RGE8 158 aa11.96□□□□□ -0.49
CLSTN3-214ENST00000542663 Q6ZRG5 221 aa11.96□□□□□ -0.49
CLSTN3-214ENST00000542663 C9orf47Q6ZRZ4 202 aa11.96□□□□□ -0.49
CLSTN3-214ENST00000542663 FAM30AQ9NZY2 134 aa11.96□□□□□ -0.49
CLSTN3-214ENST00000542663 IGHV1OR15-1A0A075B7D0 117 aa11.95□□□□□ -0.5
CLSTN3-214ENST00000542663 RGS13O14921 159 aa11.95□□□□□ -0.5
CLSTN3-214ENST00000542663 NDUFB6O95139 128 aa11.95□□□□□ -0.5
CLSTN3-214ENST00000542663 MBPP02686 304 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-214ENST00000542663 SFTA3P0C7M3 94 aa11.95□□□□□ -0.5
CLSTN3-214ENST00000542663 SRIP30626 198 aa11.95□□□□□ -0.5
CLSTN3-214ENST00000542663 CRYGDP07320 174 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 NMBP08949 121 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 IQCF2Q8IXL9 164 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 EXOC3-AS1Q8N2X6 119 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 OR1L4Q8NGR5 311 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 NTN5Q8WTR8 489 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 ZNF479Q96JC4 524 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 PFDN5Q99471 154 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 GSKIPQ9P0R6 139 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 PRELID1Q9Y255 219 aa11.94□□□□□ -0.5
CLSTN3-214ENST00000542663 IGKV2-40A0A087WW87 121 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 TRGV4A0A0C4DH28 118 aa11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 KRTAP29-1A8MX34 341 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 IGKV2D-40P01614 121 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 PYYP10082 97 aa11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 GYPEP15421 78 aa11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 S100A5P33763 92 aa11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 TMEM14CQ9P0S9 112 aa11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 WDR83OSQ9Y284 106 aa11.93□□□□□ -0.5
CLSTN3-214ENST00000542663 HIST1H1EP10412 219 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 ZNF415Q09FC8 603 aa11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 PDE6HQ13956 83 aa11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 C10orf126Q8N4M7 172 aa11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 ARPC5LQ9BPX5 153 aa11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 SLC39A9Q9NUM3 307 aa11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 ZNF492Q9P255 531 aa11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 HMCN2Q8NDA2 5059 aa11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 LRP1Q07954 4544 aaKnown RBP11.92□□□□□ -0.5
CLSTN3-214ENST00000542663 CST7O76096 145 aa11.91□□□□□ -0.5
CLSTN3-214ENST00000542663 RPL29P47914 159 aaKnown RBP11.91□□□□□ -0.5
CLSTN3-214ENST00000542663 RAB31Q13636 194 aa11.91□□□□□ -0.5
CLSTN3-214ENST00000542663 Q8N814 137 aa11.91□□□□□ -0.5
CLSTN3-214ENST00000542663 OR10G4Q8NGN3 311 aa11.91□□□□□ -0.5
CLSTN3-214ENST00000542663 BLNKQ8WV28 456 aa11.91□□□□□ -0.5
CLSTN3-214ENST00000542663 SRRQ9GZT4 340 aa11.91□□□□□ -0.5
CLSTN3-214ENST00000542663 TIMM9Q9Y5J7 89 aa11.91□□□□□ -0.5
CLSTN3-214ENST00000542663 PSCAO43653 123 aa11.9□□□□□ -0.5
CLSTN3-214ENST00000542663 VWC2Q2TAL6 325 aa11.9□□□□□ -0.5
CLSTN3-214ENST00000542663 TMEM78Q5T7P6 136 aa11.9□□□□□ -0.5
CLSTN3-214ENST00000542663 C12orf45Q8N5I9 185 aaPredicted RBP11.9□□□□□ -0.5
CLSTN3-214ENST00000542663 PCNPQ8WW12 178 aaKnown RBP11.9□□□□□ -0.5
CLSTN3-214ENST00000542663 C11orf1Q9H5F2 150 aa11.9□□□□□ -0.5
CLSTN3-214ENST00000542663 UQCC1Q9NVA1 299 aa11.9□□□□□ -0.5
CLSTN3-214ENST00000542663 UBR4Q5T4S7 5183 aa11.89□□□□□ -0.51
CLSTN3-214ENST00000542663 ORM1P02763 201 aa11.89□□□□□ -0.51
CLSTN3-214ENST00000542663 MUC21Q5SSG8 566 aa11.89□□□□□ -0.51
CLSTN3-214ENST00000542663 FAM122CQ6P4D5 195 aa11.89□□□□□ -0.51
CLSTN3-214ENST00000542663 MITD1Q8WV92 249 aa11.89□□□□□ -0.51
CLSTN3-214ENST00000542663 RASL10AQ92737 203 aa11.89□□□□□ -0.51
CLSTN3-214ENST00000542663 LOC100131303A0A0U1RQF7 123 aa11.88□□□□□ -0.51
CLSTN3-214ENST00000542663 L7N2F9 121 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms