RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 TMEM208Q9BTX3 173 aa6.93□□□□□ -1.3
YBX3-212ENST00000542002 Q9H3A6 140 aa6.93□□□□□ -1.3
YBX3-212ENST00000542002 YTHDF2Q9Y5A9 579 aaKnown RBP6.93□□□□□ -1.3
YBX3-212ENST00000542002 VPS13DQ5THJ4 4388 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 TRAV12-3A0A0B4J271 114 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 A0A1W2PPV4 95 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 TMEM189A5PLL7 270 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 ZNF324O75467 553 aaPredicted RBP6.92□□□□□ -1.3
YBX3-212ENST00000542002 STAG3L2P0CL84 134 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 STAG3L3P0CL85 134 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 ARL14EPLP0DKL9 152 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 TAS2R45P59539 299 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 UBE2L3P68036 154 aaKnown RBP6.92□□□□□ -1.3
YBX3-212ENST00000542002 SERF2P84101 59 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 PRR9Q5T870 116 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 Q6ZNX1 250 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 LYPD1Q8N2G4 141 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 SUN5Q8TC36 379 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 HYLS1Q96M11 299 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 LINC00477Q96M19 166 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 ODF3Q96PU9 254 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 AAMDCQ9H7C9 122 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 APLNQ9ULZ1 77 aa6.92□□□□□ -1.3
YBX3-212ENST00000542002 KLK5Q9Y337 293 aaPredicted RBP6.92□□□□□ -1.3
YBX3-212ENST00000542002 BORCS7-ASMTA0A0B4J1R7 106 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 PGPA6NDG6 321 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 KLLNB2CW77 178 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 IGLL5B9A064 214 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 DIRC3C9JPN6 131 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 TSPOP30536 169 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 RNASE4P34096 147 aaKnown RBP6.91□□□□□ -1.3
YBX3-212ENST00000542002 CDC34P49427 236 aaPredicted RBP6.91□□□□□ -1.3
YBX3-212ENST00000542002 TAS2R60P59551 318 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 PQLC2Q6ZP29 291 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 KCNRGQ8N5I3 272 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 ZFAND2AQ8N6M9 145 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 C2CD4CQ8TF44 421 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 LINC00476Q8WZB0 136 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 ST6GAL2Q96JF0 529 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 ZNF492Q9P255 531 aa6.91□□□□□ -1.3
YBX3-212ENST00000542002 DEFB131BA0A096LNP1 70 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 TRAV10A0A0B4J240 114 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 HMSDA8MTL9 139 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 C11orf94C9JXX5 98 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 H7BYZ3 331 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 JTBO76095 146 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 CRISP2P16562 243 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 GCHFRP30047 84 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 LEPP41159 167 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 BTN1A1Q13410 526 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 TMEM256Q8N2U0 113 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 Q8TAT8 98 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 RNASE8Q8TDE3 154 aaKnown RBP6.9□□□□□ -1.3
YBX3-212ENST00000542002 GNPNAT1Q96EK6 184 aaPredicted RBP6.9□□□□□ -1.3
YBX3-212ENST00000542002 TVP23CQ96ET8 276 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 NIPSNAP3BQ9BS92 247 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 TMPRSS5Q9H3S3 457 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 OTORQ9NRC9 128 aa6.9□□□□□ -1.3
YBX3-212ENST00000542002 TAAR5O14804 337 aa6.89□□□□□ -1.31
YBX3-212ENST00000542002 LY6G6CO95867 125 aa6.89□□□□□ -1.31
YBX3-212ENST00000542002 MBP02144 154 aa6.89□□□□□ -1.31
YBX3-212ENST00000542002 SLC25A5P05141 298 aaKnown RBP6.89□□□□□ -1.31
YBX3-212ENST00000542002 FHITP49789 147 aa6.89□□□□□ -1.31
YBX3-212ENST00000542002 ZNF138P52744 262 aa6.89□□□□□ -1.31
YBX3-212ENST00000542002 GNG5P63218 68 aa6.89□□□□□ -1.31
YBX3-212ENST00000542002 C20orf144Q9BQM9 153 aa6.89□□□□□ -1.31
YBX3-212ENST00000542002 ACTR3CQ9C0K3 210 aaPredicted RBP6.89□□□□□ -1.31
YBX3-212ENST00000542002 TP53TG3Q9ULZ0 132 aa6.89□□□□□ -1.31
YBX3-212ENST00000542002 EPPK1P58107 5090 aaKnown RBP6.88□□□□□ -1.31
YBX3-212ENST00000542002 IGHV4-4A0A075B6R2 117 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 TRAV8-1A0A0A6YYK1 113 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 C7orf71A4D174 169 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 RBAKDNA6NC62 111 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 GPX1P07203 203 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 NMBP08949 121 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 DEFB130BP0DP73 79 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 DEFB130AP0DP74 79 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 CSN1S1P47710 185 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 FGF8P55075 233 aaPredicted RBP6.88□□□□□ -1.31
YBX3-212ENST00000542002 ZNF345Q14585 488 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 TMEM78Q5T7P6 136 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 RXFP4Q8TDU9 374 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 SGK494Q96LW2 274 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 ARPC5LQ9BPX5 153 aa6.88□□□□□ -1.31
YBX3-212ENST00000542002 NOP10Q9NPE3 64 aaKnown RBP6.88□□□□□ -1.31
YBX3-212ENST00000542002 LYRM9A8MSI8 78 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 GGTLC3B5MD39 225 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 CXorf1O96002 111 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 HTN3P15516 51 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 DAD1P61803 113 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 SUMO1P63165 101 aaKnown RBP6.87□□□□□ -1.31
YBX3-212ENST00000542002 LGALSLQ3ZCW2 172 aaPredicted RBP6.87□□□□□ -1.31
YBX3-212ENST00000542002 LGALS9CQ6DKI2 356 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 GOLT1AQ6ZVE7 132 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 TMUB2Q71RG4 321 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 C11orf72Q8NBR9 251 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 TMEM263Q8WUH6 116 aaKnown RBP6.87□□□□□ -1.31
YBX3-212ENST00000542002 C16orf74Q96GX8 76 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 RPH3ALQ9UNE2 315 aa6.87□□□□□ -1.31
YBX3-212ENST00000542002 TIMM8BQ9Y5J9 83 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms