RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 COX8CQ7Z4L0 72 aa13.3□□□□□ -0.28
CLIP1-215ENST00000541108 SPAG8Q99932 426 aaPredicted RBP13.3□□□□□ -0.28
CLIP1-215ENST00000541108 ATRQ13535 2644 aa13.3□□□□□ -0.28
CLIP1-215ENST00000541108 TFPI2P48307 235 aa13.29□□□□□ -0.28
CLIP1-215ENST00000541108 BTN1A1Q13410 526 aa13.29□□□□□ -0.28
CLIP1-215ENST00000541108 NHLRC2Q8NBF2 726 aa13.29□□□□□ -0.28
CLIP1-215ENST00000541108 LINC00477Q96M19 166 aa13.29□□□□□ -0.28
CLIP1-215ENST00000541108 PRR25Q96S07 402 aa13.29□□□□□ -0.28
CLIP1-215ENST00000541108 ZNF747Q9BV97 191 aa13.29□□□□□ -0.28
CLIP1-215ENST00000541108 SMCO4Q9NRQ5 59 aa13.29□□□□□ -0.28
CLIP1-215ENST00000541108 SAP30O75446 220 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 OR5I1Q13606 314 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 TMEM78Q5T7P6 136 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 FAM231DQ6ZW35 169 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 OR2K2Q8NGT1 345 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 OR10J6PQ8NGY7 276 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 AGPAT4-IT1Q9H0P7 198 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 OSTCQ9NRP0 149 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 LENEPQ9Y5L5 61 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 OR4C46A6NHA9 309 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 IGLV1-51P01701 117 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 ERVFC1-1P60608 527 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 C15orf54Q8N8G6 183 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 OR8A1Q8NGG7 326 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 OR10G8Q8NGN5 311 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 TMEM158Q8WZ71 300 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 NDFIP1Q9BT67 221 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 ZNF492Q9P255 531 aa13.28□□□□□ -0.28
CLIP1-215ENST00000541108 ZNF688P0C7X2 276 aa13.27□□□□□ -0.29
CLIP1-215ENST00000541108 PRB4P10163 310 aaPredicted RBP13.27□□□□□ -0.29
CLIP1-215ENST00000541108 ZNF138P52744 262 aa13.27□□□□□ -0.29
CLIP1-215ENST00000541108 IBA57Q5T440 356 aaKnown RBP13.27□□□□□ -0.29
CLIP1-215ENST00000541108 TMEM88Q6PEY1 159 aa13.27□□□□□ -0.29
CLIP1-215ENST00000541108 FAM24BQ8N5W8 94 aa13.27□□□□□ -0.29
CLIP1-215ENST00000541108 NPIPB6E9PJ23 425 aa13.26□□□□□ -0.29
CLIP1-215ENST00000541108 H7BYZ3 331 aa13.26□□□□□ -0.29
CLIP1-215ENST00000541108 ERCC8Q13216 396 aa13.26□□□□□ -0.29
CLIP1-215ENST00000541108 PSMG4Q5JS54 123 aa13.26□□□□□ -0.29
CLIP1-215ENST00000541108 ZNF256Q9Y2P7 627 aaPredicted RBP13.26□□□□□ -0.29
CLIP1-215ENST00000541108 TENM1Q9UKZ4 2725 aa13.25□□□□□ -0.29
CLIP1-215ENST00000541108 TRBV7-9A0A0J9YWB2 115 aa13.25□□□□□ -0.29
CLIP1-215ENST00000541108 INSL3P51460 131 aa13.25□□□□□ -0.29
CLIP1-215ENST00000541108 CBLN2Q8IUK8 224 aa13.25□□□□□ -0.29
CLIP1-215ENST00000541108 CT45A10P0DMU9 189 aa13.24□□□□□ -0.29
CLIP1-215ENST00000541108 Q8TAT8 98 aa13.24□□□□□ -0.29
CLIP1-215ENST00000541108 IMMP2LQ96T52 175 aa13.24□□□□□ -0.29
CLIP1-215ENST00000541108 RNASE7Q9H1E1 156 aaKnown RBP13.24□□□□□ -0.29
CLIP1-215ENST00000541108 PRR27Q6MZM9 219 aa13.24□□□□□ -0.29
CLIP1-215ENST00000541108 SHISA2Q6UWI4 295 aa13.24□□□□□ -0.29
CLIP1-215ENST00000541108 C3orf56Q8N813 242 aa13.24□□□□□ -0.29
CLIP1-215ENST00000541108 ZC2HC1AQ96GY0 325 aa13.24□□□□□ -0.29
CLIP1-215ENST00000541108 C19orf71A6NCJ1 209 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 HIST1H1AQ02539 215 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-215ENST00000541108 SMUG1Q53HV7 270 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 EBLN2Q6P2I7 272 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 C12orf54Q6X4T0 127 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 FOXI2Q6ZQN5 318 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 NUDT10Q8NFP7 164 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 DAZAP1Q96EP5 407 aaKnown RBP13.23□□□□□ -0.29
CLIP1-215ENST00000541108 NUDT11Q96G61 164 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 C8orf49Q96NF6 230 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 GPR61Q9BZJ8 451 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 V9GYV3 84 aa13.23□□□□□ -0.29
CLIP1-215ENST00000541108 A0A0J9YX75 114 aa13.22□□□□□ -0.29
CLIP1-215ENST00000541108 IZUMO1RA6ND01 250 aa13.22□□□□□ -0.29
CLIP1-215ENST00000541108 F6UB75 175 aa13.22□□□□□ -0.29
CLIP1-215ENST00000541108 ZNF705DP0CH99 300 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-215ENST00000541108 ZNF705BP0CI00 300 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-215ENST00000541108 CMC4P56277 68 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-215ENST00000541108 LINC00322Q6ZN03 302 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-215ENST00000541108 WFDC9Q8NEX5 89 aa13.22□□□□□ -0.29
CLIP1-215ENST00000541108 SAV1Q9H4B6 383 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-215ENST00000541108 FBN1P35555 2871 aaKnown RBP13.22□□□□□ -0.29
CLIP1-215ENST00000541108 DUSP14O95147 198 aaKnown RBP13.21□□□□□ -0.29
CLIP1-215ENST00000541108 FAM19A4Q96LR4 140 aa13.21□□□□□ -0.29
CLIP1-215ENST00000541108 ASCL2Q99929 193 aa13.21□□□□□ -0.29
CLIP1-215ENST00000541108 SORL1Q92673 2214 aa13.21□□□□□ -0.3
CLIP1-215ENST00000541108 ZNF705GA8MUZ8 300 aaPredicted RBP13.21□□□□□ -0.3
CLIP1-215ENST00000541108 P01737 135 aa13.21□□□□□ -0.3
CLIP1-215ENST00000541108 CRIP1P50238 77 aa13.21□□□□□ -0.3
CLIP1-215ENST00000541108 DEFB131AP59861 70 aa13.21□□□□□ -0.3
CLIP1-215ENST00000541108 DEFB1P60022 68 aa13.21□□□□□ -0.3
CLIP1-215ENST00000541108 FAM162BQ5T6X4 162 aa13.21□□□□□ -0.3
CLIP1-215ENST00000541108 C9orf66Q5T8R8 295 aa13.21□□□□□ -0.3
CLIP1-215ENST00000541108 ODF3Q96PU9 254 aa13.21□□□□□ -0.3
CLIP1-215ENST00000541108 MCRIP2Q9BUT9 160 aaKnown RBP13.21□□□□□ -0.3
CLIP1-215ENST00000541108 GATCO43716 136 aaKnown RBP13.2□□□□□ -0.3
CLIP1-215ENST00000541108 PFN1P07737 140 aaKnown RBP13.2□□□□□ -0.3
CLIP1-215ENST00000541108 S100PP25815 95 aa13.2□□□□□ -0.3
CLIP1-215ENST00000541108 CT83Q5H943 113 aa13.2□□□□□ -0.3
CLIP1-215ENST00000541108 OR4B1Q8NGF8 309 aa13.2□□□□□ -0.3
CLIP1-215ENST00000541108 FAM110AQ9BQ89 295 aa13.2□□□□□ -0.3
CLIP1-215ENST00000541108 MAP6D1Q9H9H5 199 aa13.2□□□□□ -0.3
CLIP1-215ENST00000541108 FABP5P3A8MUU1 101 aa13.19□□□□□ -0.3
CLIP1-215ENST00000541108 CRISP2P16562 243 aa13.19□□□□□ -0.3
CLIP1-215ENST00000541108 ELOBQ15370 118 aa13.19□□□□□ -0.3
CLIP1-215ENST00000541108 GDF5OSQ5U4N7 250 aa13.19□□□□□ -0.3
CLIP1-215ENST00000541108 KCNIP4Q6PIL6 250 aa13.19□□□□□ -0.3
CLIP1-215ENST00000541108 YPEL4Q96NS1 127 aa13.19□□□□□ -0.3
CLIP1-215ENST00000541108 IL36BQ9NZH7 164 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms