RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CEP295Q9C0D2 2601 aa7.45□□□□□ -1.22
CLIP1-214ENST00000540539 IGLV3-12A0A075B6K2 115 aa7.45□□□□□ -1.22
CLIP1-214ENST00000540539 PRO0628Q9UI54 55 aa7.45□□□□□ -1.22
CLIP1-214ENST00000540539 NCBP2LA6PVI3 153 aaKnown RBP7.44□□□□□ -1.22
CLIP1-214ENST00000540539 OVOL1O14753 267 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 PATE4P0C8F1 98 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 MALP21145 153 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 MYCNOSP40205 109 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 RPL13AP40429 203 aaKnown RBP7.44□□□□□ -1.22
CLIP1-214ENST00000540539 EBI3Q14213 229 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 VKORC1L1Q8N0U8 176 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 ORMDL3Q8N138 153 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 PAXXQ9BUH6 204 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 FREM2Q5SZK8 3169 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 TRAV3A0A0B4J244 114 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 LGALS9O00182 355 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 MRPS12O15235 138 aaKnown RBP7.44□□□□□ -1.22
CLIP1-214ENST00000540539 RS1O15537 224 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 RPL35AP18077 110 aaKnown RBP7.44□□□□□ -1.22
CLIP1-214ENST00000540539 DLX6P56179 175 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 EDDM3AQ14507 147 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 MRPL14Q6P1L8 145 aaKnown RBP7.44□□□□□ -1.22
CLIP1-214ENST00000540539 ZNF497Q6ZNH5 498 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 Q71RC1 249 aaPredicted RBP7.44□□□□□ -1.22
CLIP1-214ENST00000540539 LINC00596Q86U02 117 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 DPH3Q96FX2 82 aa7.44□□□□□ -1.22
CLIP1-214ENST00000540539 MRPL35Q9NZE8 188 aaKnown RBP7.44□□□□□ -1.22
CLIP1-214ENST00000540539 C16orf47Q6ZP98 133 aaPredicted RBP7.43□□□□□ -1.22
CLIP1-214ENST00000540539 NDUFA11Q86Y39 141 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 AMN1Q8IY45 258 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 SPANXCQ9NY87 97 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 IGKV3D-11A0A0A0MRZ8 115 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 ZFAND5O76080 213 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 LGALS1P09382 135 aaKnown RBP7.43□□□□□ -1.22
CLIP1-214ENST00000540539 FAM27BQ5VT28 67 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 FXYD5Q96DB9 178 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 MRPL20Q9BYC9 149 aaKnown RBP7.43□□□□□ -1.22
CLIP1-214ENST00000540539 CYSTM1Q9H1C7 97 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 JPT2Q9H910 190 aa7.43□□□□□ -1.22
CLIP1-214ENST00000540539 LINC00527Q9UJ94 153 aa7.42□□□□□ -1.22
CLIP1-214ENST00000540539 TRGV8A0A0C4DH27 118 aa7.42□□□□□ -1.22
CLIP1-214ENST00000540539 SMKR1H3BMG3 65 aa7.42□□□□□ -1.22
CLIP1-214ENST00000540539 CRYGAP11844 174 aa7.42□□□□□ -1.22
CLIP1-214ENST00000540539 LEPP41159 167 aa7.42□□□□□ -1.22
CLIP1-214ENST00000540539 C3orf36Q3SXR2 165 aa7.42□□□□□ -1.22
CLIP1-214ENST00000540539 DTX2Q86UW9 622 aa7.42□□□□□ -1.22
CLIP1-214ENST00000540539 SRSF12Q8WXF0 261 aaKnown RBP7.42□□□□□ -1.22
CLIP1-214ENST00000540539 PKIGQ9Y2B9 76 aa7.42□□□□□ -1.22
CLIP1-214ENST00000540539 ZNF32P17041 273 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 FAM104BQ5XKR9 115 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 FMC1Q96HJ9 113 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 DSCR8Q96T75 97 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 RTL8AQ9BWD3 113 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 ASPMQ8IZT6 3477 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 DOCK7Q96N67 2140 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 CELSR3Q9NYQ7 3312 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 PGPA6NDG6 321 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 ENSAO43768 121 aaKnown RBP7.41□□□□□ -1.22
CLIP1-214ENST00000540539 FCGR3BO75015 233 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 ACACAQ13085 2346 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 MRPL51Q4U2R6 128 aaKnown RBP7.41□□□□□ -1.22
CLIP1-214ENST00000540539 MDP1Q86V88 176 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 MYOZ3Q8TDC0 251 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 SCNM1Q9BWG6 230 aa7.41□□□□□ -1.22
CLIP1-214ENST00000540539 hADV29S1A0JD25 119 aa7.4□□□□□ -1.22
CLIP1-214ENST00000540539 INS-IGF2F8WCM5 200 aa7.4□□□□□ -1.22
CLIP1-214ENST00000540539 COX7CP15954 63 aa7.4□□□□□ -1.22
CLIP1-214ENST00000540539 FOLR3P41439 243 aa7.4□□□□□ -1.22
CLIP1-214ENST00000540539 APC2O95996 2303 aa7.4□□□□□ -1.22
CLIP1-214ENST00000540539 IGHV3-20A0A0C4DH32 117 aa7.4□□□□□ -1.23
CLIP1-214ENST00000540539 ZNF785A8K8V0 405 aa7.4□□□□□ -1.23
CLIP1-214ENST00000540539 H3BMM0 161 aa7.4□□□□□ -1.23
CLIP1-214ENST00000540539 UBE2WQ96B02 151 aa7.4□□□□□ -1.23
CLIP1-214ENST00000540539 FRYQ5TBA9 3013 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 NCOR2Q9Y618 2525 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 NDUFA3O95167 84 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 LINC00336Q6ZUF6 198 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 Q86TA4 180 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 FAM19A4Q96LR4 140 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 C2orf48Q96LS8 159 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 IMUPQ9GZP8 106 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 PYGO1Q9Y3Y4 419 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 CACNA1AO00555 2505 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 FAM240AA0A1B0GVK7 77 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 C12orf77C9JDV5 145 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 CNTFRP26992 372 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 SVILO95425 2214 aa7.39□□□□□ -1.23
CLIP1-214ENST00000540539 IGHV3-15A0A0B4J1V0 119 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 ZNHIT1O43257 154 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 PLAUP00749 431 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 TCRAP04437 139 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 CFC1BP0CG36 223 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 CFC1P0CG37 223 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 CKS2P33552 79 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 ERVK-16P61578 105 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 FOXF2Q12947 444 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 MLANAQ16655 118 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 LINC01600Q96MT4 127 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 COX7A2P2O60397 106 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 FSTL3O95633 263 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms