RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TRIQKQ629K1 86 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 NFE4Q86UQ8 179 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 CHAC2Q8WUX2 184 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 AGPAT4-IT1Q9H0P7 198 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 C11orf1Q9H5F2 150 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 TMEM14CQ9P0S9 112 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 PRO0255Q9UI72 69 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 PRELID1Q9Y255 219 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 KLF12Q9Y4X4 402 aa9.25□□□□□ -0.93
SS18-204ENST00000539244 L7N2F9 121 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 MPDU1O75352 247 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 NDUFB4O95168 129 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 HIST1H1EP10412 219 aaKnown RBP9.24□□□□□ -0.93
SS18-204ENST00000539244 RPL29P47914 159 aaKnown RBP9.24□□□□□ -0.93
SS18-204ENST00000539244 INPP1P49441 399 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 VAMP2P63027 116 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 ERCC8Q13216 396 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 SLAQ13239 276 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 CNPY1Q3B7I2 92 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 C9orf47Q6ZRZ4 202 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 C12orf45Q8N5I9 185 aaPredicted RBP9.24□□□□□ -0.93
SS18-204ENST00000539244 VGLL1Q99990 258 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 SLC39A9Q9NUM3 307 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 UQCC1Q9NVA1 299 aa9.24□□□□□ -0.93
SS18-204ENST00000539244 A0A087WTM6 91 aa9.23□□□□□ -0.93
SS18-204ENST00000539244 K7EP13 123 aa9.23□□□□□ -0.93
SS18-204ENST00000539244 FUSP35637 526 aaKnown RBP eCLIP9.23□□□□□ -0.93
SS18-204ENST00000539244 CRYBA4P53673 196 aa9.23□□□□□ -0.93
SS18-204ENST00000539244 MRPL23Q16540 153 aaKnown RBP9.23□□□□□ -0.93
SS18-204ENST00000539244 Q5VSD8 79 aa9.23□□□□□ -0.93
SS18-204ENST00000539244 ZFAND2AQ8N6M9 145 aa9.23□□□□□ -0.93
SS18-204ENST00000539244 SDHCQ99643 169 aaPredicted RBP9.23□□□□□ -0.93
SS18-204ENST00000539244 TNFRSF18Q9Y5U5 241 aa9.23□□□□□ -0.93
SS18-204ENST00000539244 CENPXA8MT69 81 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 CST7O76096 145 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 GPX1P07203 203 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 RNASE4P34096 147 aaKnown RBP9.22□□□□□ -0.93
SS18-204ENST00000539244 KRTAP10-1P60331 282 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 FHL2Q14192 279 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 LYPD5Q6UWN5 251 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 FRZBQ92765 325 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 C20orf85Q9H1P6 137 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 TP53TG3Q9ULZ0 132 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 HHLA3Q9XRX5 114 aa9.22□□□□□ -0.93
SS18-204ENST00000539244 MYCBP2O75592 4640 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 IGHV1OR15-1A0A075B7D0 117 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 TRAV9-2A0A087WT02 112 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 FAM24AA6NFZ4 105 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 CCSO14618 274 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 DNAH10OSP0CZ25 163 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 S100A11P31949 105 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 BCAP31P51572 246 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 CAV2P51636 162 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 ZNF846Q147U1 533 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 PRR9Q5T870 116 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 NEGR1Q7Z3B1 354 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 RBM38Q9H0Z9 239 aaKnown RBP9.21□□□□□ -0.94
SS18-204ENST00000539244 LSM5Q9Y4Y9 91 aaKnown RBP9.21□□□□□ -0.94
SS18-204ENST00000539244 TIMM9Q9Y5J7 89 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 LY96Q9Y6Y9 160 aa9.21□□□□□ -0.94
SS18-204ENST00000539244 TRBV7-9A0A0J9YWB2 115 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 UBE2L5PA0A1B0GUS4 154 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 RGS13O14921 159 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 IFNA5P01569 189 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 IGHV3-53P01767 116 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 PYYP10082 97 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 SULT1A1P50225 295 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 BAXQ07812 192 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 EXOC3-AS1Q8N2X6 119 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 MRPL32Q9BYC8 188 aaKnown RBP9.2□□□□□ -0.94
SS18-204ENST00000539244 AAMDCQ9H7C9 122 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 LYRM2Q9NU23 88 aaPredicted RBP9.2□□□□□ -0.94
SS18-204ENST00000539244 MRPL16Q9NX20 251 aaKnown RBP9.2□□□□□ -0.94
SS18-204ENST00000539244 ZNF492Q9P255 531 aa9.2□□□□□ -0.94
SS18-204ENST00000539244 IGKV2-40A0A087WW87 121 aaPredicted RBP9.19□□□□□ -0.94
SS18-204ENST00000539244 CCDC160A6NGH7 325 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 PRAF2O60831 178 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 IGKV2D-40P01614 121 aaPredicted RBP9.19□□□□□ -0.94
SS18-204ENST00000539244 PVALBP20472 110 aaPredicted RBP9.19□□□□□ -0.94
SS18-204ENST00000539244 ICAM4Q14773 271 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 TMEM78Q5T7P6 136 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 Q6ZQT7 251 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 IQCF2Q8IXL9 164 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 TMEM252Q8N6L7 170 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 C8orf49Q96NF6 230 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 ARPC5LQ9BPX5 153 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 MSRB1Q9NZV6 116 aa9.19□□□□□ -0.94
SS18-204ENST00000539244 FLG2Q5D862 2391 aaPredicted RBP9.19□□□□□ -0.94
SS18-204ENST00000539244 IGSF23A1L1A6 192 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 K7EQD1 137 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 IL7P13232 177 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 FGF7P21781 194 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 HBG1P69891 147 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 HBG2P69892 147 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 ZNF415Q09FC8 603 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 IL15RAQ13261 267 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 ATP6V1FQ16864 119 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 WFDC10BQ8IUB3 73 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 BLNKQ8WV28 456 aa9.18□□□□□ -0.94
SS18-204ENST00000539244 FAM167A-AS1Q96KT0 104 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms