RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ZNF138P52744 262 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 LOXL1Q08397 574 aaPredicted RBP5.11□□□□□ -1.59
USP28-206ENST00000538224 LINC01559Q495D7 138 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 C9orf47Q6ZRZ4 202 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 C8orf86Q6ZUL3 223 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 BCL6BQ8N143 479 aaPredicted RBP5.11□□□□□ -1.59
USP28-206ENST00000538224 LRRC75A-AS1Q8N1F1 130 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 GLMPQ8WWB7 406 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 C16orf92Q96LL3 132 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 CNFNQ9BYD5 112 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 NPFFR1Q9GZQ6 430 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 BEX4Q9NWD9 120 aaPredicted RBP5.11□□□□□ -1.59
USP28-206ENST00000538224 RELNP78509 3460 aa5.11□□□□□ -1.59
USP28-206ENST00000538224 IGHV1-24A0A0C4DH33 117 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 IGHV3-35A0A0C4DH35 117 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 TRBV7-9A0A0J9YWB2 115 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 LINC01548A6NM66 108 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 LEPROTL1O95214 131 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 ABCA1O95477 2261 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 IGHG4P01861 327 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 PPBPP02775 128 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 IGLC6P0CF74 106 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 RBX1P62877 108 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 LY6EQ16553 131 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.1□□□□□ -1.59
USP28-206ENST00000538224 LYZL1Q6UWQ5 148 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 FA2HQ7L5A8 372 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 ORMDL3Q8N138 153 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 TEX29Q8N6K0 151 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 Q8TAT8 98 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 VGLL1Q99990 258 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 MIEN1Q9BRT3 115 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 TMEM70Q9BUB7 260 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 TPPP3Q9BW30 176 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 MAP1LC3CQ9BXW4 147 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 AP5S1Q9NUS5 200 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 LAMTOR2Q9Y2Q5 125 aa5.1□□□□□ -1.59
USP28-206ENST00000538224 UBR5O95071 2799 aaPredicted RBP5.09□□□□□ -1.59
USP28-206ENST00000538224 K7EMT4 169 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 M0R143 59 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 CRXO43186 299 aaPredicted RBP5.09□□□□□ -1.59
USP28-206ENST00000538224 ORM1P02763 201 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 ZNF25P17030 456 aaPredicted RBP5.09□□□□□ -1.59
USP28-206ENST00000538224 CACNG7P62955 275 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 CFHR3Q02985 330 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 FAM106AQ4KMX7 169 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 SPATA45Q537H7 98 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 FAM104BQ5XKR9 115 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 PET117Q6UWS5 81 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 FAM19A2Q8N3H0 131 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 Q8N976 141 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 ZNF738Q8NE65 137 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 OR4X2Q8NGF9 303 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 OR10J6PQ8NGY7 276 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 OR10AG1Q8NH19 301 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 LINC00477Q96M19 166 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 TMEM208Q9BTX3 173 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 TMEM191AQ9H0A3 160 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 DAZ1Q9NQZ3 744 aaKnown RBP5.09□□□□□ -1.59
USP28-206ENST00000538224 UQCR10Q9UDW1 63 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 UFC1Q9Y3C8 167 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 PAM16Q9Y3D7 125 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 U3KQK5 164 aa5.09□□□□□ -1.59
USP28-206ENST00000538224 FLNCQ14315 2725 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 ANKRD17O75179 2603 aaKnown RBP5.08□□□□□ -1.6
USP28-206ENST00000538224 IGHV3OR16-8A0A075B7F1 116 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 TRAV9-2A0A087WT02 112 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 TMSB15BA0A087X1C1 80 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 A0A096LNT2 108 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 TRAV8-2A0A0B4J237 113 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 IGHV7-4-1A0A0J9YVY3 117 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 C2orf70A6NJV1 201 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 K7EP13 123 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 HLA-DMBP28068 263 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 ID1P41134 155 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 FOXE3Q13461 319 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 TWIST1Q15672 202 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 IL17RELQ6ZVW7 336 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 RNF182Q8N6D2 247 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 PRSS3P2Q8NHM4 247 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 URB1-AS1Q96HZ7 61 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 PRELID3AQ96N28 172 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 AGPAT4-IT1Q9H0P7 198 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 PEF1Q9UBV8 284 aaKnown RBP5.08□□□□□ -1.6
USP28-206ENST00000538224 CACNA1BQ00975 2339 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 USP24Q9UPU5 2620 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 MYO18BQ8IUG5 2567 aa5.08□□□□□ -1.6
USP28-206ENST00000538224 TRAV21A0A0B4J279 112 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 IGHV3-66A0A0C4DH42 116 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 PRAC2D3DTV9 90 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 D6R8Y8 96 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 SYS1-DBNDD2H3BUS1 97 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 ZNF207O43670 478 aaKnown RBP5.07□□□□□ -1.6
USP28-206ENST00000538224 FSHBP01225 129 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 RPLP1P05386 114 aaKnown RBP5.07□□□□□ -1.6
USP28-206ENST00000538224 MED14OSP0DP75 135 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 CKS2P33552 79 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 ZNF80P51504 273 aaPredicted RBP5.07□□□□□ -1.6
USP28-206ENST00000538224 ERCC8Q13216 396 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 MRPL51Q4U2R6 128 aaKnown RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms