RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 COA6Q5JTJ3 125 aaKnown RBP9.12□□□□□ -0.95
CLIP1-208ENST00000537004 FAM223AQ8IWN6 122 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 SMIM12Q96EX1 92 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 KLK15Q9H2R5 256 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 ZNF705GA8MUZ8 300 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-208ENST00000537004 LTAP01374 205 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 TRGV3P03979 118 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 RPL7P18124 248 aaKnown RBP9.12□□□□□ -0.95
CLIP1-208ENST00000537004 CD33P20138 364 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 S100A7P31151 101 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 PDE6HQ13956 83 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 BEAN1Q3B7T3 259 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 PRR27Q6MZM9 219 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 GOLT1AQ6ZVE7 132 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 FAM231DQ6ZW35 169 aa9.12□□□□□ -0.95
CLIP1-208ENST00000537004 AMBPP02760 352 aa9.11□□□□□ -0.95
CLIP1-208ENST00000537004 PPIFP30405 207 aaKnown RBP9.11□□□□□ -0.95
CLIP1-208ENST00000537004 OR8I2Q8N0Y5 310 aa9.11□□□□□ -0.95
CLIP1-208ENST00000537004 WFDC9Q8NEX5 89 aa9.11□□□□□ -0.95
CLIP1-208ENST00000537004 ATP6V0BQ99437 205 aa9.11□□□□□ -0.95
CLIP1-208ENST00000537004 MLST8Q9BVC4 326 aa9.11□□□□□ -0.95
CLIP1-208ENST00000537004 CBY1Q9Y3M2 126 aa9.11□□□□□ -0.95
CLIP1-208ENST00000537004 TRAV8-1A0A0A6YYK1 113 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 IGLV2-11P01706 119 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 IGHG4P01861 327 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 PSMB8P28062 276 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 TPPP2P59282 170 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 Q86TA4 180 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 RAX2Q96IS3 184 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 TRAPPC1Q9Y5R8 145 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 SMIM27A0A1W2PRY6 76 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 CA1P00915 261 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-208ENST00000537004 TCL1AP56279 114 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 FOXE3Q13461 319 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 LINC00482Q8N8I6 264 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 NUDT10Q8NFP7 164 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 NUDT11Q96G61 164 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 AAMDCQ9H7C9 122 aa9.1□□□□□ -0.95
CLIP1-208ENST00000537004 H3BUA1 57 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 BRI3O95415 125 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 ELANEP08246 267 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 PSG9Q00887 426 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 RNF152Q8N8N0 203 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 K7EQM0 130 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 M0R3E3 92 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 RAB9AP51151 201 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 KPRPQ5T749 579 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-208ENST00000537004 PRNTQ86SH4 94 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 MRPL52Q86TS9 123 aaKnown RBP9.09□□□□□ -0.95
CLIP1-208ENST00000537004 TMEM75Q8N9X5 138 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 SMAD5-AS1Q9Y6J3 95 aa9.09□□□□□ -0.95
CLIP1-208ENST00000537004 TRBV6-1A0A0K0K1D8 114 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 DIRC3C9JPN6 131 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 M0R143 59 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 EREGO14944 169 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 BUB3O43684 328 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 IGLV1-40P01703 118 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 CBLN1P23435 193 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 ARL3P36405 182 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 GRAMD2BQ96HH9 432 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 USMG5Q96IX5 58 aa9.08□□□□□ -0.96
CLIP1-208ENST00000537004 CCL24O00175 119 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 SPINK4O60575 86 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 FRMD6-AS1P0C7T7 363 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 PRB4P10163 310 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-208ENST00000537004 HOXD3P31249 432 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-208ENST00000537004 RPL19P84098 196 aaKnown RBP9.07□□□□□ -0.96
CLIP1-208ENST00000537004 PSG3Q16557 428 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 LINC00322Q6ZN03 302 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-208ENST00000537004 METTL26Q96S19 204 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 SNHG12Q9BXW3 62 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 ZNF492Q9P255 531 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 ZNF580Q9UK33 172 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 XKRY2A2RUG3 117 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 IZUMO1RA6ND01 250 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 ZNF253O75346 499 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 CSN1S1P47710 185 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 GAGE1Q13065 139 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 IQCJQ1A5X6 159 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 MYOZ3Q8TDC0 251 aa9.07□□□□□ -0.96
CLIP1-208ENST00000537004 IGHV3-66A0A0C4DH42 116 aa9.06□□□□□ -0.96
CLIP1-208ENST00000537004 C19orf71A6NCJ1 209 aa9.06□□□□□ -0.96
CLIP1-208ENST00000537004 ZNF207O43670 478 aaKnown RBP9.06□□□□□ -0.96
CLIP1-208ENST00000537004 TRBV12-3P01733 135 aa9.06□□□□□ -0.96
CLIP1-208ENST00000537004 APOHP02749 345 aaPredicted RBP9.06□□□□□ -0.96
CLIP1-208ENST00000537004 KRTAP10-11P60412 298 aa9.06□□□□□ -0.96
CLIP1-208ENST00000537004 C1orf194Q5T5A4 169 aa9.06□□□□□ -0.96
CLIP1-208ENST00000537004 TSKUQ8WUA8 353 aa9.06□□□□□ -0.96
CLIP1-208ENST00000537004 RPP21Q9H633 154 aaKnown RBP9.06□□□□□ -0.96
CLIP1-208ENST00000537004 PSG8Q9UQ74 426 aa9.06□□□□□ -0.96
CLIP1-208ENST00000537004 IGHV3OR16-13A0A075B7E8 117 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 A0A087X0K7 114 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.05□□□□□ -0.96
CLIP1-208ENST00000537004 IGHV3-74A0A0B4J1X5 117 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 ZNF785A8K8V0 405 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 P01737 135 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 IGHV3-11P01762 117 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 OR11H1Q8NG94 326 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 TMEM18Q96B42 140 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 DAZAP1Q96EP5 407 aaKnown RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms