RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 OR11H2Q8NH07 326 aa5.18□□□□□ -1.58
USP28-202ENST00000535607 ZNF418Q8TF45 676 aaPredicted RBP5.18□□□□□ -1.58
USP28-202ENST00000535607 ZNF479Q96JC4 524 aa5.18□□□□□ -1.58
USP28-202ENST00000535607 CHAC1Q9BUX1 264 aa5.18□□□□□ -1.58
USP28-202ENST00000535607 GEMIN7Q9H840 131 aaKnown RBP5.18□□□□□ -1.58
USP28-202ENST00000535607 LINC00574Q9H8X3 128 aa5.18□□□□□ -1.58
USP28-202ENST00000535607 SPANXB1Q9NS25 103 aaPredicted RBP5.18□□□□□ -1.58
USP28-202ENST00000535607 SPRR3Q9UBC9 169 aa5.18□□□□□ -1.58
USP28-202ENST00000535607 RNF7Q9UBF6 113 aa5.18□□□□□ -1.58
USP28-202ENST00000535607 NBEAQ8NFP9 2946 aa5.18□□□□□ -1.58
USP28-202ENST00000535607 TLN1Q9Y490 2541 aaKnown RBP5.18□□□□□ -1.58
USP28-202ENST00000535607 USP24Q9UPU5 2620 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 CNTRLQ7Z7A1 2325 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 IGKV1D-17A0A075B6S4 117 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 PRSS47A8MTI9 375 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 E9PLD3 99 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 K7EM74 188 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 SNAI2O43623 268 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 DPM2O94777 84 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 IGKCP01834 107 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 SAA1P0DJI8 122 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 CGB3P0DN86 165 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 CGB7P0DN87 165 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 EVI2AP22794 236 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 HOXD3P31249 432 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 CKS2P33552 79 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 IFI27P40305 119 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 FOXG1P55316 489 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 LINC00205P59089 165 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 MEF2CQ06413 473 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 KLRD1Q13241 179 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 KLF17Q5JT82 389 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 FAM104BQ5XKR9 115 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 ZNF562Q6V9R5 426 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 ZNF833PQ6ZTB9 187 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 C8orf31Q8N9H6 132 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 FAM57AQ8TBR7 257 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 ITLN1Q8WWA0 313 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 RND1Q92730 232 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 DEFB127Q9H1M4 99 aa5.17□□□□□ -1.58
USP28-202ENST00000535607 ZNF71Q9NQZ8 489 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 TET2Q6N021 2002 aaPredicted RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 PRRC2CQ9Y520 2896 aaKnown RBP5.17□□□□□ -1.58
USP28-202ENST00000535607 KALRNO60229 2985 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 TNFRSF13BO14836 293 aaPredicted RBP5.16□□□□□ -1.58
USP28-202ENST00000535607 APOMO95445 188 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 IGKV3-15P01624 115 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 PRSS1P07477 247 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 PLNP26678 52 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 FCER1GP30273 86 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 ZNF138P52744 262 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 C3AR1Q16581 482 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 C17orf58Q2M2W7 97 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 ASPHD1Q5U4P2 390 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 PATE2Q6UY27 113 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 MYOZ3Q8TDC0 251 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 DCTN5Q9BTE1 182 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 NHP2Q9NX24 153 aaKnown RBP5.16□□□□□ -1.58
USP28-202ENST00000535607 RPUSD1Q9UJJ7 312 aaKnown RBP5.16□□□□□ -1.58
USP28-202ENST00000535607 LINC00312Q9Y6C7 94 aa5.16□□□□□ -1.58
USP28-202ENST00000535607 SPTA1P02549 2419 aa5.15□□□□□ -1.58
USP28-202ENST00000535607 PIEZO2Q9H5I5 2752 aa5.15□□□□□ -1.58
USP28-202ENST00000535607 IGHV3-64DA0A0J9YX35 117 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 LOC389332A0A1B0GUA5 103 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 A0A1B0GWB2 263 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 LINC01546A6NGU7 62 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 IGLL5B9A064 214 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 D6R8Y8 96 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 H3BMG7 143 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 SPRY3O43610 288 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 NDUFS7O75251 213 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 IL4P05112 153 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 CRYGCP07315 174 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 ARMS2P0C7Q2 107 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 GP9P14770 177 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 IGHV1-2P23083 117 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 PDE6HQ13956 83 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 ALKBH6Q3KRA9 238 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 FAM53AQ6NSI3 398 aaPredicted RBP5.15□□□□□ -1.59
USP28-202ENST00000535607 GFRALQ6UXV0 394 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 GOLT1AQ6ZVE7 132 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 HIST1H4GQ99525 98 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 SRSF8Q9BRL6 282 aaKnown RBP5.15□□□□□ -1.59
USP28-202ENST00000535607 TPPP3Q9BW30 176 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 C1QTNF4Q9BXJ3 329 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 RALYQ9UKM9 306 aaKnown RBP5.15□□□□□ -1.59
USP28-202ENST00000535607 PSG8Q9UQ74 426 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 INSIG2Q9Y5U4 225 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 F11RQ9Y624 299 aaKnown RBP5.15□□□□□ -1.59
USP28-202ENST00000535607 MAP1BP46821 2468 aaKnown RBP5.15□□□□□ -1.59
USP28-202ENST00000535607 USF3Q68DE3 2245 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 RTTNQ86VV8 2226 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 TANC2Q9HCD6 1990 aa5.15□□□□□ -1.59
USP28-202ENST00000535607 TRBV20-1A0A075B6N2 111 aa5.14□□□□□ -1.59
USP28-202ENST00000535607 IGKV1D-37A0A075B6S9 117 aa5.14□□□□□ -1.59
USP28-202ENST00000535607 LINC01549A6NIU2 74 aa5.14□□□□□ -1.59
USP28-202ENST00000535607 OVOL3O00110 214 aa5.14□□□□□ -1.59
USP28-202ENST00000535607 ZNHIT1O43257 154 aa5.14□□□□□ -1.59
USP28-202ENST00000535607 LYZL6O75951 148 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms