RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ICOSQ9Y6W8 199 aa16.07■□□□□ 0.16
CPSF1-202ENST00000527827 EREGO14944 169 aa16.06■□□□□ 0.16
CPSF1-202ENST00000527827 CST7O76096 145 aa16.06■□□□□ 0.16
CPSF1-202ENST00000527827 RNASE4P34096 147 aaKnown RBP16.06■□□□□ 0.16
CPSF1-202ENST00000527827 CDPF1Q6NVV7 123 aa16.06■□□□□ 0.16
CPSF1-202ENST00000527827 ST6GAL2Q96JF0 529 aa16.06■□□□□ 0.16
CPSF1-202ENST00000527827 SDHCQ99643 169 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-202ENST00000527827 SLC39A9Q9NUM3 307 aa16.06■□□□□ 0.16
CPSF1-202ENST00000527827 LSM5Q9Y4Y9 91 aaKnown RBP16.06■□□□□ 0.16
CPSF1-202ENST00000527827 IGHV3-53P01767 116 aa16.05■□□□□ 0.16
CPSF1-202ENST00000527827 RPL29P47914 159 aaKnown RBP16.05■□□□□ 0.16
CPSF1-202ENST00000527827 BCAP31P51572 246 aa16.05■□□□□ 0.16
CPSF1-202ENST00000527827 VWC2Q2TAL6 325 aa16.05■□□□□ 0.16
CPSF1-202ENST00000527827 UQCC1Q9NVA1 299 aa16.05■□□□□ 0.16
CPSF1-202ENST00000527827 PTTG2Q9NZH5 202 aa16.05■□□□□ 0.16
CPSF1-202ENST00000527827 TP53TG3Q9ULZ0 132 aa16.05■□□□□ 0.16
CPSF1-202ENST00000527827 FAM24AA6NFZ4 105 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 CCDC160A6NGH7 325 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 MPDU1O75352 247 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 DNAH10OSP0CZ25 163 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 CRISP2P16562 243 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 CAV2P51636 162 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 IBA57Q5T440 356 aaKnown RBP16.04■□□□□ 0.16
CPSF1-202ENST00000527827 LYPD5Q6UWN5 251 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 TMEM14CQ9P0S9 112 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 PRELID1Q9Y255 219 aa16.04■□□□□ 0.16
CPSF1-202ENST00000527827 HIST1H1EP10412 219 aaKnown RBP16.03■□□□□ 0.16
CPSF1-202ENST00000527827 KRTAP10-1P60331 282 aa16.03■□□□□ 0.16
CPSF1-202ENST00000527827 PRR9Q5T870 116 aa16.03■□□□□ 0.16
CPSF1-202ENST00000527827 Q6ZQT7 251 aa16.03■□□□□ 0.16
CPSF1-202ENST00000527827 C9orf47Q6ZRZ4 202 aa16.03■□□□□ 0.16
CPSF1-202ENST00000527827 EXOC3-AS1Q8N2X6 119 aa16.03■□□□□ 0.16
CPSF1-202ENST00000527827 C12orf45Q8N5I9 185 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-202ENST00000527827 ZFAND2AQ8N6M9 145 aa16.03■□□□□ 0.16
CPSF1-202ENST00000527827 MRPL16Q9NX20 251 aaKnown RBP16.03■□□□□ 0.16
CPSF1-202ENST00000527827 PRO0255Q9UI72 69 aa16.03■□□□□ 0.16
CPSF1-202ENST00000527827 A0A087WTM6 91 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 CENPXA8MT69 81 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 GPX1P07203 203 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 PYYP10082 97 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 CRYBA4P53673 196 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 PDE6HQ13956 83 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 ZNF846Q147U1 533 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 Q5VSD8 79 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 C20orf85Q9H1P6 137 aa16.02■□□□□ 0.16
CPSF1-202ENST00000527827 VPS13BQ7Z7G8 4022 aa16.02■□□□□ 0.15
CPSF1-202ENST00000527827 UBE2L5PA0A1B0GUS4 154 aa16.01■□□□□ 0.15
CPSF1-202ENST00000527827 NMBP08949 121 aa16.01■□□□□ 0.15
CPSF1-202ENST00000527827 FHL2Q14192 279 aa16.01■□□□□ 0.15
CPSF1-202ENST00000527827 NFE4Q86UQ8 179 aa16.01■□□□□ 0.15
CPSF1-202ENST00000527827 CHAC2Q8WUX2 184 aa16.01■□□□□ 0.15
CPSF1-202ENST00000527827 VGLL1Q99990 258 aa16.01■□□□□ 0.15
CPSF1-202ENST00000527827 RBM38Q9H0Z9 239 aaKnown RBP16.01■□□□□ 0.15
CPSF1-202ENST00000527827 TIMM9Q9Y5J7 89 aa16.01■□□□□ 0.15
CPSF1-202ENST00000527827 IGKV2-40A0A087WW87 121 aaPredicted RBP16■□□□□ 0.15
CPSF1-202ENST00000527827 FAM25EA8MYX2 175 aa16■□□□□ 0.15
CPSF1-202ENST00000527827 RGS13O14921 159 aa16■□□□□ 0.15
CPSF1-202ENST00000527827 IGKV2D-40P01614 121 aaPredicted RBP16■□□□□ 0.15
CPSF1-202ENST00000527827 BAXQ07812 192 aa16■□□□□ 0.15
CPSF1-202ENST00000527827 BLNKQ8WV28 456 aa16■□□□□ 0.15
CPSF1-202ENST00000527827 C8orf49Q96NF6 230 aa16■□□□□ 0.15
CPSF1-202ENST00000527827 HHLA3Q9XRX5 114 aa16■□□□□ 0.15
CPSF1-202ENST00000527827 IGHV1OR15-1A0A075B7D0 117 aa15.99■□□□□ 0.15
CPSF1-202ENST00000527827 PRAF2O60831 178 aa15.99■□□□□ 0.15
CPSF1-202ENST00000527827 SLAQ13239 276 aa15.99■□□□□ 0.15
CPSF1-202ENST00000527827 MRPL23Q16540 153 aaKnown RBP15.99■□□□□ 0.15
CPSF1-202ENST00000527827 CNPY1Q3B7I2 92 aa15.99■□□□□ 0.15
CPSF1-202ENST00000527827 IGSF23A1L1A6 192 aa15.98■□□□□ 0.15
CPSF1-202ENST00000527827 IL7P13232 177 aa15.98■□□□□ 0.15
CPSF1-202ENST00000527827 S100A11P31949 105 aa15.98■□□□□ 0.15
CPSF1-202ENST00000527827 SULT1A1P50225 295 aa15.98■□□□□ 0.15
CPSF1-202ENST00000527827 ICAM4Q14773 271 aa15.98■□□□□ 0.15
CPSF1-202ENST00000527827 FRZBQ92765 325 aa15.98■□□□□ 0.15
CPSF1-202ENST00000527827 LYRM2Q9NU23 88 aaPredicted RBP15.98■□□□□ 0.15
CPSF1-202ENST00000527827 C5orf51A6NDU8 294 aa15.97■□□□□ 0.15
CPSF1-202ENST00000527827 FGF7P21781 194 aa15.97■□□□□ 0.15
CPSF1-202ENST00000527827 GCSAMLQ5JQS6 135 aa15.97■□□□□ 0.15
CPSF1-202ENST00000527827 TMEM78Q5T7P6 136 aa15.97■□□□□ 0.15
CPSF1-202ENST00000527827 NEGR1Q7Z3B1 354 aa15.97■□□□□ 0.15
CPSF1-202ENST00000527827 ZNF492Q9P255 531 aa15.97■□□□□ 0.15
CPSF1-202ENST00000527827 LY96Q9Y6Y9 160 aa15.97■□□□□ 0.15
CPSF1-202ENST00000527827 MYCBP2O75592 4640 aa15.97■□□□□ 0.15
CPSF1-202ENST00000527827 FLG2Q5D862 2391 aaPredicted RBP15.97■□□□□ 0.15
CPSF1-202ENST00000527827 TRAV9-2A0A087WT02 112 aa15.96■□□□□ 0.15
CPSF1-202ENST00000527827 IFNA5P01569 189 aa15.96■□□□□ 0.15
CPSF1-202ENST00000527827 FAM122CQ6P4D5 195 aa15.96■□□□□ 0.15
CPSF1-202ENST00000527827 TMEM252Q8N6L7 170 aa15.96■□□□□ 0.15
CPSF1-202ENST00000527827 C2orf50Q96LR7 162 aa15.96■□□□□ 0.15
CPSF1-202ENST00000527827 ARPC5LQ9BPX5 153 aa15.96■□□□□ 0.15
CPSF1-202ENST00000527827 SLC25A2Q9BXI2 301 aa15.96■□□□□ 0.15
CPSF1-202ENST00000527827 MRPL32Q9BYC8 188 aaKnown RBP15.96■□□□□ 0.15
CPSF1-202ENST00000527827 AAMDCQ9H7C9 122 aa15.96■□□□□ 0.15
CPSF1-202ENST00000527827 PLA2G10O15496 165 aa15.95■□□□□ 0.14
CPSF1-202ENST00000527827 PVALBP20472 110 aaPredicted RBP15.95■□□□□ 0.14
CPSF1-202ENST00000527827 IL15RAQ13261 267 aa15.95■□□□□ 0.14
CPSF1-202ENST00000527827 WFDC10BQ8IUB3 73 aa15.95■□□□□ 0.14
CPSF1-202ENST00000527827 FAM167A-AS1Q96KT0 104 aa15.95■□□□□ 0.14
CPSF1-202ENST00000527827 SEC22CQ9BRL7 303 aa15.95■□□□□ 0.14
CPSF1-202ENST00000527827 MSRB1Q9NZV6 116 aa15.95■□□□□ 0.14
CPSF1-202ENST00000527827 ZNF415Q09FC8 603 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms