RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 J3KRW8 73 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 ATP5G1P05496 136 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 PRB4P10163 310 aaPredicted RBP11.58□□□□□ -0.56
LSM1-205ENST00000523511 ATP5G3P48201 142 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 C15orf53Q8NAA6 179 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 OR10G4Q8NGN3 311 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 OR10G9Q8NGN4 311 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 OR10G7Q8NGN6 311 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 CMTM2Q8TAZ6 248 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 AGPAT4-IT1Q9H0P7 198 aa11.58□□□□□ -0.56
LSM1-205ENST00000523511 PLECQ15149 4684 aaKnown RBP11.57□□□□□ -0.56
LSM1-205ENST00000523511 TRBV7-9A0A0J9YWB2 115 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 C7orf71A4D174 169 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 RBAKDNA6NC62 111 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 PRM2P04554 102 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 SERF2P84101 59 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 ERCC8Q13216 396 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 POM121L12Q8N7R1 296 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 ZNF680Q8NEM1 530 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 WFDC1Q9HC57 220 aa11.57□□□□□ -0.56
LSM1-205ENST00000523511 BORCS7-ASMTA0A0B4J1R7 106 aa11.56□□□□□ -0.56
LSM1-205ENST00000523511 F5H768 121 aa11.56□□□□□ -0.56
LSM1-205ENST00000523511 ZNF138P52744 262 aa11.56□□□□□ -0.56
LSM1-205ENST00000523511 UBE2DNLQ8IWF7 75 aa11.56□□□□□ -0.56
LSM1-205ENST00000523511 RNASE8Q8TDE3 154 aaKnown RBP11.56□□□□□ -0.56
LSM1-205ENST00000523511 PSMG3Q9BT73 122 aaPredicted RBP11.56□□□□□ -0.56
LSM1-205ENST00000523511 Q9H3A6 140 aa11.56□□□□□ -0.56
LSM1-205ENST00000523511 NOP10Q9NPE3 64 aaKnown RBP11.56□□□□□ -0.56
LSM1-205ENST00000523511 DNAH1Q9P2D7 4330 aa11.55□□□□□ -0.56
LSM1-205ENST00000523511 CRISP2P16562 243 aa11.55□□□□□ -0.56
LSM1-205ENST00000523511 RNASE4P34096 147 aaKnown RBP11.55□□□□□ -0.56
LSM1-205ENST00000523511 ARL6IP6Q8N6S5 226 aa11.55□□□□□ -0.56
LSM1-205ENST00000523511 HSD17B11Q8NBQ5 300 aa11.55□□□□□ -0.56
LSM1-205ENST00000523511 GNPNAT1Q96EK6 184 aaPredicted RBP11.55□□□□□ -0.56
LSM1-205ENST00000523511 ZNF492Q9P255 531 aa11.55□□□□□ -0.56
LSM1-205ENST00000523511 IGKV2-40A0A087WW87 121 aaPredicted RBP11.54□□□□□ -0.56
LSM1-205ENST00000523511 PLAC8L1A1L4L8 177 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 KLLNB2CW77 178 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 RGS13O14921 159 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 IGKV2D-40P01614 121 aaPredicted RBP11.54□□□□□ -0.56
LSM1-205ENST00000523511 KIR3DS1Q14943 382 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 RNF212Q495C1 297 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 TMEM88Q6PEY1 159 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 EIF4E3Q8N5X7 224 aaKnown RBP11.54□□□□□ -0.56
LSM1-205ENST00000523511 OR2T35Q8NGX2 323 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 OR2G3Q8NGZ4 309 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 PHYHIPLQ96FC7 376 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 FAM19A4Q96LR4 140 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 LINC00467Q9BRT7 94 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 OTORQ9NRC9 128 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 LENEPQ9Y5L5 61 aa11.54□□□□□ -0.56
LSM1-205ENST00000523511 FXYD6-FXYD2A0A087WZ82 144 aa11.53□□□□□ -0.56
LSM1-205ENST00000523511 PGPA6NDG6 321 aa11.53□□□□□ -0.56
LSM1-205ENST00000523511 CDC34P49427 236 aaPredicted RBP11.53□□□□□ -0.56
LSM1-205ENST00000523511 HYLS1Q96M11 299 aa11.53□□□□□ -0.56
LSM1-205ENST00000523511 VGLL1Q99990 258 aa11.53□□□□□ -0.56
LSM1-205ENST00000523511 TNFSF18Q9UNG2 199 aa11.53□□□□□ -0.56
LSM1-205ENST00000523511 TAAR5O14804 337 aa11.52□□□□□ -0.57
LSM1-205ENST00000523511 ZNF324O75467 553 aaPredicted RBP11.52□□□□□ -0.57
LSM1-205ENST00000523511 DAZ2Q13117 558 aaKnown RBP11.52□□□□□ -0.57
LSM1-205ENST00000523511 ANXA2RQ3ZCQ2 193 aa11.52□□□□□ -0.57
LSM1-205ENST00000523511 TMED6Q8WW62 240 aa11.52□□□□□ -0.57
LSM1-205ENST00000523511 ZNF503Q96F45 646 aa11.52□□□□□ -0.57
LSM1-205ENST00000523511 ARPC5LQ9BPX5 153 aa11.52□□□□□ -0.57
LSM1-205ENST00000523511 ATG101Q9BSB4 218 aa11.52□□□□□ -0.57
LSM1-205ENST00000523511 ACTR3CQ9C0K3 210 aaPredicted RBP11.52□□□□□ -0.57
LSM1-205ENST00000523511 HYDINQ4G0P3 5121 aa11.51□□□□□ -0.57
LSM1-205ENST00000523511 DIRC3C9JPN6 131 aa11.51□□□□□ -0.57
LSM1-205ENST00000523511 K7EQM0 130 aa11.51□□□□□ -0.57
LSM1-205ENST00000523511 ATP6V0CP27449 155 aa11.51□□□□□ -0.57
LSM1-205ENST00000523511 FAM3BP58499 235 aaPredicted RBP11.51□□□□□ -0.57
LSM1-205ENST00000523511 RAB2AP61019 212 aa11.51□□□□□ -0.57
LSM1-205ENST00000523511 ALMS1Q8TCU4 4167 aa11.51□□□□□ -0.57
LSM1-205ENST00000523511 SERTM2A0A1B0GWG4 89 aa11.5□□□□□ -0.57
LSM1-205ENST00000523511 CD300CQ08708 224 aa11.5□□□□□ -0.57
LSM1-205ENST00000523511 BTN1A1Q13410 526 aa11.5□□□□□ -0.57
LSM1-205ENST00000523511 TMEM167BQ9NRX6 74 aa11.5□□□□□ -0.57
LSM1-205ENST00000523511 TRGV2A0A075B6R0 118 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 IGHV1OR15-1A0A075B7D0 117 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 GAGE12BA1L429 117 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 GAGE7O76087 117 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 NUDT3O95989 172 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 CXorf1O96002 111 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 GAGE12FP0CL80 117 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 GAGE12GP0CL81 117 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 GAGE12IP0CL82 117 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 STAG3L2P0CL84 134 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 STAG3L3P0CL85 134 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 OR5I1Q13606 314 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 Q5BKY6 102 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 IBA57Q5T440 356 aaKnown RBP11.49□□□□□ -0.57
LSM1-205ENST00000523511 ZFAND2AQ8N6M9 145 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 RAB24Q969Q5 203 aa11.49□□□□□ -0.57
LSM1-205ENST00000523511 HMGB3O15347 200 aaKnown RBP11.48□□□□□ -0.57
LSM1-205ENST00000523511 CCL18P55774 89 aa11.48□□□□□ -0.57
LSM1-205ENST00000523511 FAM159AQ6UWV7 190 aa11.48□□□□□ -0.57
LSM1-205ENST00000523511 LINC00612Q8N6U2 182 aa11.48□□□□□ -0.57
LSM1-205ENST00000523511 ST6GAL2Q96JF0 529 aa11.48□□□□□ -0.57
LSM1-205ENST00000523511 NDFIP1Q9BT67 221 aa11.48□□□□□ -0.57
LSM1-205ENST00000523511 GSN-AS1Q9NRJ2 163 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms