RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PRB4P10163 310 aaPredicted RBP10.33□□□□□ -0.76
NUP54-216ENST00000514901 ERCC8Q13216 396 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 IQCF2Q8IXL9 164 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 C1orf158Q8N1D5 194 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 C9orf62Q8N4C0 152 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 Q8NAQ8 132 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 TMED6Q8WW62 240 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 TMEM208Q9BTX3 173 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 NKX6-2Q9C056 277 aaPredicted RBP10.33□□□□□ -0.76
NUP54-216ENST00000514901 MAP1LC3BQ9GZQ8 125 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 IGHV3OR16-12A0A075B7B8 117 aa10.32□□□□□ -0.76
NUP54-216ENST00000514901 IGKV2-40A0A087WW87 121 aaPredicted RBP10.32□□□□□ -0.76
NUP54-216ENST00000514901 SERTM2A0A1B0GWG4 89 aa10.32□□□□□ -0.76
NUP54-216ENST00000514901 TMEM189A5PLL7 270 aa10.32□□□□□ -0.76
NUP54-216ENST00000514901 IGKV2D-40P01614 121 aaPredicted RBP10.32□□□□□ -0.76
NUP54-216ENST00000514901 HBE1P02100 147 aa10.32□□□□□ -0.76
NUP54-216ENST00000514901 FAM213BQ8TBF2 198 aa10.32□□□□□ -0.76
NUP54-216ENST00000514901 MBD3L1Q8WWY6 194 aa10.32□□□□□ -0.76
NUP54-216ENST00000514901 VGLL1Q99990 258 aa10.32□□□□□ -0.76
NUP54-216ENST00000514901 PLA2G2EQ9NZK7 142 aa10.32□□□□□ -0.76
NUP54-216ENST00000514901 TRAV12-2A0A075B6T6 113 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 IGHV4-28A0A0C4DH34 117 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 CRISP2P16562 243 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 FHITP49789 147 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 ZNF138P52744 262 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 FGF8P55075 233 aaPredicted RBP10.31□□□□□ -0.76
NUP54-216ENST00000514901 C5orf17Q8NAS9 161 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 SFT2D1Q8WV19 159 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 FAM19A4Q96LR4 140 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 LINC01587Q99440 93 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 ZNF492Q9P255 531 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 LENEPQ9Y5L5 61 aa10.31□□□□□ -0.76
NUP54-216ENST00000514901 K7EQM0 130 aa10.3□□□□□ -0.76
NUP54-216ENST00000514901 H2AFB1P0C5Y9 115 aa10.3□□□□□ -0.76
NUP54-216ENST00000514901 RBMY1A1P0DJD3 496 aaKnown RBP10.3□□□□□ -0.76
NUP54-216ENST00000514901 RBMY1CP0DJD4 496 aa10.3□□□□□ -0.76
NUP54-216ENST00000514901 SUMO1P63165 101 aaKnown RBP10.3□□□□□ -0.76
NUP54-216ENST00000514901 RBMY1FQ15415 496 aaKnown RBP10.3□□□□□ -0.76
NUP54-216ENST00000514901 RRN3P1Q2M238 152 aa10.3□□□□□ -0.76
NUP54-216ENST00000514901 KLLNB2CW77 178 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 H7BYZ3 331 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 PPT1P50897 306 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 TAS2R60P59551 318 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 GFI1BQ5VTD9 330 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 C11orf45Q8TAV5 145 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 TMPRSS5Q9H3S3 457 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 EPDR1Q9UM22 224 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 ARL2-SNX15V9GYD0 113 aa10.29□□□□□ -0.76
NUP54-216ENST00000514901 C7orf71A4D174 169 aa10.28□□□□□ -0.76
NUP54-216ENST00000514901 FBLL1A6NHQ2 334 aaKnown RBP10.28□□□□□ -0.76
NUP54-216ENST00000514901 TEX46H3BTG2 121 aa10.28□□□□□ -0.76
NUP54-216ENST00000514901 DEFB4AO15263 64 aa10.28□□□□□ -0.76
NUP54-216ENST00000514901 GPX1P07203 203 aa10.28□□□□□ -0.76
NUP54-216ENST00000514901 SULT1A2P50226 295 aa10.28□□□□□ -0.76
NUP54-216ENST00000514901 GOLT1AQ6ZVE7 132 aa10.28□□□□□ -0.76
NUP54-216ENST00000514901 NIPSNAP3BQ9BS92 247 aa10.28□□□□□ -0.76
NUP54-216ENST00000514901 RPH3ALQ9UNE2 315 aa10.28□□□□□ -0.76
NUP54-216ENST00000514901 TRAV1-1A0A0B4J248 108 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 LOC102723971A0A1B0GUV8 181 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 FAM74A7A6NL05 159 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 GGTLC3B5MD39 225 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 TCRAP04437 139 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 UBE2G2P60604 165 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 KIR3DS1Q14943 382 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 ZFAND2AQ8N6M9 145 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 PYGO2Q9BRQ0 406 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 TCEAL7Q9BRU2 100 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 ATG101Q9BSB4 218 aa10.27□□□□□ -0.77
NUP54-216ENST00000514901 YTHDF2Q9Y5A9 579 aaKnown RBP10.27□□□□□ -0.77
NUP54-216ENST00000514901 TRAV12-3A0A0B4J271 114 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 TEX48A0A1B0GUV7 120 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 CXorf65A6NEN9 183 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 ZNF705GA8MUZ8 300 aaPredicted RBP10.26□□□□□ -0.77
NUP54-216ENST00000514901 F6UZH7 168 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 J3KRW8 73 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 IFNA7P01567 189 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 RNASE4P34096 147 aaKnown RBP10.26□□□□□ -0.77
NUP54-216ENST00000514901 GNG5P63218 68 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 ZNF493Q6ZR52 646 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 CCDC28AQ8IWP9 274 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 CYB561D1Q8N8Q1 229 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 HIST1H2BAQ96A08 127 aa10.26□□□□□ -0.77
NUP54-216ENST00000514901 ZNF324O75467 553 aaPredicted RBP10.25□□□□□ -0.77
NUP54-216ENST00000514901 SPART-AS1P0CW21 52 aa10.25□□□□□ -0.77
NUP54-216ENST00000514901 NKX2-5P52952 324 aaPredicted RBP10.25□□□□□ -0.77
NUP54-216ENST00000514901 CASC10Q5T4H9 136 aa10.25□□□□□ -0.77
NUP54-216ENST00000514901 CST9LP1Q5W188 147 aa10.25□□□□□ -0.77
NUP54-216ENST00000514901 Q8TAT8 98 aa10.25□□□□□ -0.77
NUP54-216ENST00000514901 NDFIP1Q9BT67 221 aa10.25□□□□□ -0.77
NUP54-216ENST00000514901 HTN1P15515 57 aa10.24□□□□□ -0.77
NUP54-216ENST00000514901 EMP1P54849 157 aa10.24□□□□□ -0.77
NUP54-216ENST00000514901 TMEM75Q8N9X5 138 aa10.24□□□□□ -0.77
NUP54-216ENST00000514901 C16orf74Q96GX8 76 aa10.24□□□□□ -0.77
NUP54-216ENST00000514901 LINC00467Q9BRT7 94 aa10.24□□□□□ -0.77
NUP54-216ENST00000514901 PSG8Q9UQ74 426 aa10.24□□□□□ -0.77
NUP54-216ENST00000514901 TRAV8-1A0A0A6YYK1 113 aa10.23□□□□□ -0.77
NUP54-216ENST00000514901 A0A1B0GV50 99 aa10.23□□□□□ -0.77
NUP54-216ENST00000514901 PEX7O00628 323 aa10.23□□□□□ -0.77
NUP54-216ENST00000514901 PAGE4O60829 102 aa10.23□□□□□ -0.77
NUP54-216ENST00000514901 NANOS2P60321 138 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms