RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 KIR3DS1Q14943 382 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 FAM231DQ6ZW35 169 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 COPS9Q8WXC6 57 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 GFRA4Q9GZZ7 299 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 USP9XQ93008 2570 aaPredicted RBP10.11□□□□□ -0.79
USP53-209ENST00000514665 TRAV8-2A0A0B4J237 113 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 FAM104BQ5XKR9 115 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 PRSS57Q6UWY2 283 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 C17orf77Q96MU5 243 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 SRSF8Q9BRL6 282 aaKnown RBP10.11□□□□□ -0.79
USP53-209ENST00000514665 NAV3Q8IVL0 2385 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 NDUFS7O75251 213 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 C3orf36Q3SXR2 165 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 OR5A1Q8NGJ0 315 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 DKK4Q9UBT3 224 aa10.11□□□□□ -0.79
USP53-209ENST00000514665 USP9YO00507 2555 aaPredicted RBP10.1□□□□□ -0.79
USP53-209ENST00000514665 UNC80Q8N2C7 3258 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 PIP4P2Q8N4L2 257 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 MAPK1IP1LQ8NDC0 245 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 VWC2Q2TAL6 325 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 CT83Q5H943 113 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 KLF2Q9Y5W3 355 aaPredicted RBP10.1□□□□□ -0.79
USP53-209ENST00000514665 ALPK3Q96L96 1907 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 SMIM27A0A1W2PRY6 76 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 FAM231BA6NCW3 169 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 PLA2G5P39877 138 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 KRTAP27-1Q3LI81 207 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 IL17RELQ6ZVW7 336 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 PRR25Q96S07 402 aa10.1□□□□□ -0.79
USP53-209ENST00000514665 MRPS16Q9Y3D3 137 aaKnown RBP10.1□□□□□ -0.79
USP53-209ENST00000514665 A0A1W2PNU3 283 aaPredicted RBP10.09□□□□□ -0.79
USP53-209ENST00000514665 C22orf46C9J442 243 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 NPC2P61916 151 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 GAGE13Q4V321 117 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 TMEM75Q8N9X5 138 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 ZC2HC1AQ96GY0 325 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 TRGV11A0A075B6L2 103 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 PLNP26678 52 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 GRNP28799 593 aaKnown RBP10.09□□□□□ -0.79
USP53-209ENST00000514665 TRBV7-9A0A0J9YWB2 115 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 IGLC7A0M8Q6 106 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 COX11Q9Y6N1 276 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 NUPR1O60356 82 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 NPSP0C0P6 89 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 SYNJ2BPP57105 145 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 LCNL1Q6ZST4 164 aa10.09□□□□□ -0.79
USP53-209ENST00000514665 IGHV1-24A0A0C4DH33 117 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 UBE2E1P51965 193 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 MAJINQ3KP22 176 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 MORN5Q5VZ52 161 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 HIVEP2P31629 2446 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 GAGE12BA1L429 117 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 MRPL51Q4U2R6 128 aaKnown RBP10.08□□□□□ -0.8
USP53-209ENST00000514665 TMEM190Q8WZ59 177 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 VCYO14598 125 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 CD5LO43866 347 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 HLA-DMBP28068 263 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 USMG5Q96IX5 58 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 PYGO2Q9BRQ0 406 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 MSRB2Q9Y3D2 182 aa10.08□□□□□ -0.8
USP53-209ENST00000514665 IGHV3-53P01767 116 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 FAM110DQ8TAY7 271 aaPredicted RBP10.07□□□□□ -0.8
USP53-209ENST00000514665 TRGV4A0A0C4DH28 118 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 A0A1B0GV72 72 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 TDGF1P13385 188 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 LINC01559Q495D7 138 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 ZNF491Q8N8L2 437 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 VGLL1Q99990 258 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 DAZ1Q9NQZ3 744 aaKnown RBP10.07□□□□□ -0.8
USP53-209ENST00000514665 DENND4AQ7Z401 1863 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 TSPAN13O95857 204 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 PIP4P1Q86T03 277 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 SPOCK3Q9BQ16 436 aa10.07□□□□□ -0.8
USP53-209ENST00000514665 KNCNA6PVL3 124 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 THAP8Q8NA92 274 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 UBE2E2Q96LR5 201 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 CHAC1Q9BUX1 264 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 DSCAML1Q8TD84 2053 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 TRAV26-2A0A0B4J265 109 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 PAX2Q02962 417 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 KAAG1Q9UBP8 84 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 ANKRD11Q6UB99 2663 aaPredicted RBP10.06□□□□□ -0.8
USP53-209ENST00000514665 PRSS46E5RG02 174 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 H3BRN7 92 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 TMEM95Q3KNT9 176 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 Q6ZPA2 131 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 CHCHD5Q9BSY4 110 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 ERG28Q9UKR5 140 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 SIGLEC8Q9NYZ4 499 aa10.06□□□□□ -0.8
USP53-209ENST00000514665 A8MWV9 139 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 NPYP01303 97 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 C8orf86Q6ZUL3 223 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 PRRC2CQ9Y520 2896 aaKnown RBP10.05□□□□□ -0.8
USP53-209ENST00000514665 TRGV1A0A0A0MS02 117 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 LHBP01229 141 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 TDRG1Q3Y452 100 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 XIRP2A4UGR9 3374 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 IGLV2-14P01704 120 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 MSMPQ1L6U9 139 aa10.05□□□□□ -0.8
USP53-209ENST00000514665 COA6Q5JTJ3 125 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms