RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 FAM231AP0DMU4 169 aa7.53□□□□□ -1.2
COL6A3-214ENST00000493608 FAM231CP0DMU5 169 aa7.53□□□□□ -1.2
COL6A3-214ENST00000493608 HIST1H1EP10412 219 aaKnown RBP7.53□□□□□ -1.2
COL6A3-214ENST00000493608 OXA1LQ15070 435 aa7.53□□□□□ -1.2
COL6A3-214ENST00000493608 TMEM256Q8N2U0 113 aa7.53□□□□□ -1.2
COL6A3-214ENST00000493608 POM121L12Q8N7R1 296 aa7.53□□□□□ -1.2
COL6A3-214ENST00000493608 SLC25A2Q9BXI2 301 aa7.53□□□□□ -1.2
COL6A3-214ENST00000493608 SMIM3Q9BZL3 60 aa7.53□□□□□ -1.2
COL6A3-214ENST00000493608 WDR61Q9GZS3 305 aaKnown RBP7.53□□□□□ -1.2
COL6A3-214ENST00000493608 NOP10Q9NPE3 64 aaKnown RBP7.53□□□□□ -1.2
COL6A3-214ENST00000493608 BATF3Q9NR55 127 aa7.53□□□□□ -1.2
COL6A3-214ENST00000493608 NACAE9PAV3 2078 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 TRAV12-3A0A0B4J271 114 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 F5H768 121 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 OR10J4P0C629 311 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 TSPOP30536 169 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 ICAM4Q14773 271 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 ANKRD39Q53RE8 183 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 UBE2DNLQ8IWF7 75 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 C16orf74Q96GX8 76 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 FAM167A-AS1Q96KT0 104 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 TMEM14CQ9P0S9 112 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 HSPB11Q9Y547 144 aa7.52□□□□□ -1.21
COL6A3-214ENST00000493608 IGLV2-18A0A075B6J9 118 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 H7BYZ3 331 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 ZNF253O75346 499 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 EIF3GO75821 320 aaKnown RBP eCLIP7.51□□□□□ -1.21
COL6A3-214ENST00000493608 NBEAP1P0C6P0 100 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 RPL12P30050 165 aaKnown RBP7.51□□□□□ -1.21
COL6A3-214ENST00000493608 FAM122CQ6P4D5 195 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 FAM210BQ96KR6 192 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 ATP5SQ99766 215 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 PAXXQ9BUH6 204 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 AGPAT4-IT1Q9H0P7 198 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 OR51M1Q9H341 326 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 MBD2Q9UBB5 411 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 TIMM8BQ9Y5J9 83 aaPredicted RBP7.51□□□□□ -1.21
COL6A3-214ENST00000493608 ALG5Q9Y673 324 aa7.51□□□□□ -1.21
COL6A3-214ENST00000493608 IGKV2-40A0A087WW87 121 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-214ENST00000493608 C17orf112F2Z3M2 114 aa7.5□□□□□ -1.21
COL6A3-214ENST00000493608 IGKV2D-40P01614 121 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-214ENST00000493608 LEPP41159 167 aa7.5□□□□□ -1.21
COL6A3-214ENST00000493608 FFAR4Q5NUL3 377 aa7.5□□□□□ -1.21
COL6A3-214ENST00000493608 SCGB1C1Q8TD33 95 aa7.5□□□□□ -1.21
COL6A3-214ENST00000493608 RNASE8Q8TDE3 154 aaKnown RBP7.5□□□□□ -1.21
COL6A3-214ENST00000493608 TMEM263Q8WUH6 116 aaKnown RBP7.5□□□□□ -1.21
COL6A3-214ENST00000493608 MRPL53Q96EL3 112 aaKnown RBP7.5□□□□□ -1.21
COL6A3-214ENST00000493608 KRTAP4-5Q9BYR2 181 aa7.5□□□□□ -1.21
COL6A3-214ENST00000493608 WFDC1Q9HC57 220 aa7.5□□□□□ -1.21
COL6A3-214ENST00000493608 FUT9Q9Y231 359 aa7.5□□□□□ -1.21
COL6A3-214ENST00000493608 CBY3A6NI87 242 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 OR7C2O60412 319 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 NUDT3O95989 172 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 IFNA5P01569 189 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 ATP5G1P05496 136 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 PET100P0DJ07 73 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 RNASE4P34096 147 aaKnown RBP7.49□□□□□ -1.21
COL6A3-214ENST00000493608 ATP5G3P48201 142 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 CD300CQ08708 224 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 BTN1A1Q13410 526 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 PDE6HQ13956 83 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 Q6ZQT7 251 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 ZNF493Q6ZR52 646 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 CCDC28AQ8IWP9 274 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 FXYD5Q96DB9 178 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 ZNF503Q96F45 646 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 PHYHIPLQ96FC7 376 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 LINC00477Q96M19 166 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 VGLL1Q99990 258 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 C20orf144Q9BQM9 153 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 AAMDCQ9H7C9 122 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 PRELID1Q9Y255 219 aa7.49□□□□□ -1.21
COL6A3-214ENST00000493608 GAGE12BA1L429 117 aa7.48□□□□□ -1.21
COL6A3-214ENST00000493608 GAGE7O76087 117 aa7.48□□□□□ -1.21
COL6A3-214ENST00000493608 GAGE12FP0CL80 117 aa7.48□□□□□ -1.21
COL6A3-214ENST00000493608 GAGE12GP0CL81 117 aa7.48□□□□□ -1.21
COL6A3-214ENST00000493608 GAGE12IP0CL82 117 aa7.48□□□□□ -1.21
COL6A3-214ENST00000493608 RANP62826 216 aaKnown RBP7.48□□□□□ -1.21
COL6A3-214ENST00000493608 OR5I1Q13606 314 aa7.48□□□□□ -1.21
COL6A3-214ENST00000493608 ODF3Q96PU9 254 aa7.48□□□□□ -1.21
COL6A3-214ENST00000493608 MRPL32Q9BYC8 188 aaKnown RBP7.48□□□□□ -1.21
COL6A3-214ENST00000493608 KCNIP2Q9NS61 270 aa7.48□□□□□ -1.21
COL6A3-214ENST00000493608 C7orf71A4D174 169 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 SNURFLB1AK76 121 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 ZNF324O75467 553 aaPredicted RBP7.47□□□□□ -1.21
COL6A3-214ENST00000493608 SLC25A5P05141 298 aaKnown RBP7.47□□□□□ -1.21
COL6A3-214ENST00000493608 GPX1P07203 203 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 TMEM78Q5T7P6 136 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 PRR9Q5T870 116 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 C9orf47Q6ZRZ4 202 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 FAM19A4Q96LR4 140 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 GSN-AS1Q9NRJ2 163 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 HECTD4Q9Y4D8 3996 aa7.47□□□□□ -1.21
COL6A3-214ENST00000493608 A0A0J9YY99 117 aa7.46□□□□□ -1.22
COL6A3-214ENST00000493608 KLLNB2CW77 178 aa7.46□□□□□ -1.22
COL6A3-214ENST00000493608 HMGB3O15347 200 aaKnown RBP7.46□□□□□ -1.22
COL6A3-214ENST00000493608 UBE2L3P68036 154 aaKnown RBP7.46□□□□□ -1.22
COL6A3-214ENST00000493608 RNF212Q495C1 297 aa7.46□□□□□ -1.22
COL6A3-214ENST00000493608 Q5BKY6 102 aa7.46□□□□□ -1.22
COL6A3-214ENST00000493608 Q6ZTI0 123 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms