RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 H7BYZ3 331 aa12.82□□□□□ -0.36
COL9A3-214ENST00000490398 DEFB130BP0DP73 79 aa12.82□□□□□ -0.36
COL9A3-214ENST00000490398 DEFB130AP0DP74 79 aa12.82□□□□□ -0.36
COL9A3-214ENST00000490398 LEPP41159 167 aa12.82□□□□□ -0.36
COL9A3-214ENST00000490398 BTN1A1Q13410 526 aa12.82□□□□□ -0.36
COL9A3-214ENST00000490398 RNASE8Q8TDE3 154 aaKnown RBP12.82□□□□□ -0.36
COL9A3-214ENST00000490398 AAMDCQ9H7C9 122 aa12.82□□□□□ -0.36
COL9A3-214ENST00000490398 TEX48A0A1B0GUV7 120 aa12.81□□□□□ -0.36
COL9A3-214ENST00000490398 LYRM9A8MSI8 78 aa12.81□□□□□ -0.36
COL9A3-214ENST00000490398 M6PRP20645 277 aa12.81□□□□□ -0.36
COL9A3-214ENST00000490398 ATP6V0CP27449 155 aa12.81□□□□□ -0.36
COL9A3-214ENST00000490398 C9orf47Q6ZRZ4 202 aa12.81□□□□□ -0.36
COL9A3-214ENST00000490398 LINC00477Q96M19 166 aa12.81□□□□□ -0.36
COL9A3-214ENST00000490398 SH3BGRL3Q9H299 93 aa12.81□□□□□ -0.36
COL9A3-214ENST00000490398 Q9H3A6 140 aa12.81□□□□□ -0.36
COL9A3-214ENST00000490398 FXYD6-FXYD2A0A087WZ82 144 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 KLLNB2CW77 178 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 SMLR1H3BR10 107 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 ACOT6Q3I5F7 207 aaPredicted RBP12.8□□□□□ -0.36
COL9A3-214ENST00000490398 KHDC3LQ587J8 217 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 OR10G4Q8NGN3 311 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 OR10G9Q8NGN4 311 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 OR10G7Q8NGN6 311 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 OR2T35Q8NGX2 323 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 Q8TAT8 98 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 C16orf74Q96GX8 76 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 C20orf144Q9BQM9 153 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 NOP10Q9NPE3 64 aaKnown RBP12.8□□□□□ -0.36
COL9A3-214ENST00000490398 TNFSF18Q9UNG2 199 aa12.8□□□□□ -0.36
COL9A3-214ENST00000490398 PKD1P98161 4303 aa12.79□□□□□ -0.36
COL9A3-214ENST00000490398 ZNF324O75467 553 aaPredicted RBP12.79□□□□□ -0.36
COL9A3-214ENST00000490398 RNASE4P34096 147 aaKnown RBP12.79□□□□□ -0.36
COL9A3-214ENST00000490398 RPL7L1Q6DKI1 246 aaKnown RBP12.79□□□□□ -0.36
COL9A3-214ENST00000490398 TMEM88Q6PEY1 159 aa12.79□□□□□ -0.36
COL9A3-214ENST00000490398 ZFAND2AQ8N6M9 145 aa12.79□□□□□ -0.36
COL9A3-214ENST00000490398 OR2G3Q8NGZ4 309 aa12.79□□□□□ -0.36
COL9A3-214ENST00000490398 TMEM263Q8WUH6 116 aaKnown RBP12.79□□□□□ -0.36
COL9A3-214ENST00000490398 NDUFAF3Q9BU61 184 aa12.79□□□□□ -0.36
COL9A3-214ENST00000490398 C7orf71A4D174 169 aa12.78□□□□□ -0.36
COL9A3-214ENST00000490398 SLC25A5P05141 298 aaKnown RBP12.78□□□□□ -0.36
COL9A3-214ENST00000490398 CRISP2P16562 243 aa12.78□□□□□ -0.36
COL9A3-214ENST00000490398 TAS2R45P59539 299 aa12.78□□□□□ -0.36
COL9A3-214ENST00000490398 ASB13Q8WXK3 278 aa12.78□□□□□ -0.36
COL9A3-214ENST00000490398 ZNF492Q9P255 531 aa12.78□□□□□ -0.36
COL9A3-214ENST00000490398 ZNF266Q14584 549 aa12.77□□□□□ -0.37
COL9A3-214ENST00000490398 TMEM78Q5T7P6 136 aa12.77□□□□□ -0.37
COL9A3-214ENST00000490398 ZNF493Q6ZR52 646 aa12.77□□□□□ -0.37
COL9A3-214ENST00000490398 SSX7Q7RTT5 188 aa12.77□□□□□ -0.37
COL9A3-214ENST00000490398 HYLS1Q96M11 299 aa12.77□□□□□ -0.37
COL9A3-214ENST00000490398 TIMM8BQ9Y5J9 83 aaPredicted RBP12.77□□□□□ -0.37
COL9A3-214ENST00000490398 A0A1W2PPV4 95 aa12.76□□□□□ -0.37
COL9A3-214ENST00000490398 PGPA6NDG6 321 aa12.76□□□□□ -0.37
COL9A3-214ENST00000490398 DIRC3C9JPN6 131 aa12.76□□□□□ -0.37
COL9A3-214ENST00000490398 ZNF138P52744 262 aa12.76□□□□□ -0.37
COL9A3-214ENST00000490398 LYPD1Q8N2G4 141 aa12.76□□□□□ -0.37
COL9A3-214ENST00000490398 INO80EQ8NBZ0 244 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-214ENST00000490398 PSMG3Q9BT73 122 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-214ENST00000490398 GPX1P07203 203 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 STAG3L2P0CL84 134 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 STAG3L3P0CL85 134 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 ARL14EPLP0DKL9 152 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 CDC34P49427 236 aaPredicted RBP12.75□□□□□ -0.37
COL9A3-214ENST00000490398 RAB24Q969Q5 203 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 PYGO2Q9BRQ0 406 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 OTORQ9NRC9 128 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 TP53TG3Q9ULZ0 132 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 RPH3ALQ9UNE2 315 aa12.75□□□□□ -0.37
COL9A3-214ENST00000490398 CBY3A6NI87 242 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 F5H768 121 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 GNG5P63218 68 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 PQLC2Q6ZP29 291 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 CCDC28AQ8IWP9 274 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 LINC00612Q8N6U2 182 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 C11orf72Q8NBR9 251 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 FAM210BQ96KR6 192 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 GSN-AS1Q9NRJ2 163 aa12.74□□□□□ -0.37
COL9A3-214ENST00000490398 PKHD1P08F94 4074 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 GAGE12BA1L429 117 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 GAGE7O76087 117 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 GAGE12FP0CL80 117 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 GAGE12GP0CL81 117 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 GAGE12IP0CL82 117 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 CSN1S1P47710 185 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 ZNF726P1Q15940 193 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 CYTL1Q9NRR1 136 aa12.73□□□□□ -0.37
COL9A3-214ENST00000490398 RBAKDNA6NC62 111 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 ARPC5O15511 151 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 ATP5G1P05496 136 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 NMBP08949 121 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 ATP5G3P48201 142 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 Q6ZTI0 123 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 EIF4E3Q8N5X7 224 aaKnown RBP12.72□□□□□ -0.37
COL9A3-214ENST00000490398 POM121L12Q8N7R1 296 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 SUN5Q8TC36 379 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 LINC00467Q9BRT7 94 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 KLF12Q9Y4X4 402 aa12.72□□□□□ -0.37
COL9A3-214ENST00000490398 TRAV8-1A0A0A6YYK1 113 aa12.71□□□□□ -0.37
COL9A3-214ENST00000490398 SNURFLB1AK76 121 aa12.71□□□□□ -0.37
COL9A3-214ENST00000490398 P0DMU3 169 aa12.71□□□□□ -0.37
COL9A3-214ENST00000490398 FAM231AP0DMU4 169 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms