RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 GNG13Q9P2W3 67 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 ARL2-SNX15V9GYD0 113 aa7.58□□□□□ -1.2
SKA1-204ENST00000488454 SERTM2A0A1B0GWG4 89 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 FAM74A7A6NL05 159 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 DIRC3C9JPN6 131 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 PAGE4O60829 102 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 CA1P00915 261 aaPredicted RBP7.57□□□□□ -1.2
SKA1-204ENST00000488454 PRB4P10163 310 aaPredicted RBP7.57□□□□□ -1.2
SKA1-204ENST00000488454 RAB14P61106 215 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 CCL20P78556 96 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 HAGHQ16775 308 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 TMEM78Q5T7P6 136 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 SBSPONQ8IVN8 264 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 ASCL2Q99929 193 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 B9D2Q9BPU9 175 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 C1QTNF4Q9BXJ3 329 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 EPDR1Q9UM22 224 aa7.57□□□□□ -1.2
SKA1-204ENST00000488454 YTHDF2Q9Y5A9 579 aaKnown RBP7.57□□□□□ -1.2
SKA1-204ENST00000488454 DNAH3Q8TD57 4116 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 IGKV2-40A0A087WW87 121 aaPredicted RBP7.56□□□□□ -1.2
SKA1-204ENST00000488454 RBAKDNA6NC62 111 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 GGTLC3B5MD39 225 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 IGKV2D-40P01614 121 aaPredicted RBP7.56□□□□□ -1.2
SKA1-204ENST00000488454 AMBPP02760 352 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 NHLRC4P0CG21 123 aaPredicted RBP7.56□□□□□ -1.2
SKA1-204ENST00000488454 TSPOP30536 169 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 TAGLN2P37802 199 aaKnown RBP7.56□□□□□ -1.2
SKA1-204ENST00000488454 FXYD7P58549 80 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 ERCC8Q13216 396 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 ANKRD39Q53RE8 183 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 GOLT1AQ6ZVE7 132 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 HIST1H2BAQ96A08 127 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 AGPAT4-IT1Q9H0P7 198 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 ZMAT4Q9H898 229 aa7.56□□□□□ -1.2
SKA1-204ENST00000488454 C11orf94C9JXX5 98 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 NPIPB6E9PJ23 425 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 TCRAP04437 139 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 LEPP41159 167 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 ZNF138P52744 262 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 GNG5P63218 68 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 PMS2P11Q13670 270 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 C9orf47Q6ZRZ4 202 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 Q6ZWC4 215 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 VGLL1Q99990 258 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 TXNDC17Q9BRA2 123 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 TCEAL7Q9BRU2 100 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 ATG101Q9BSB4 218 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 XCL2Q9UBD3 114 aa7.55□□□□□ -1.2
SKA1-204ENST00000488454 FBLL1A6NHQ2 334 aaKnown RBP7.54□□□□□ -1.2
SKA1-204ENST00000488454 A8MTW9 85 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 PEX7O00628 323 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 CT45A10P0DMU9 189 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 CDKN1BP46527 198 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 ATP5G3P48201 142 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 SPINK13Q1W4C9 94 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 ZNF767PQ75MW2 155 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 CYB561D1Q8N8Q1 229 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 RCHY1Q96PM5 261 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 ODF3Q96PU9 254 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 SPATA25Q9BR10 227 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 NDFIP1Q9BT67 221 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 SLC35B3Q9H1N7 401 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 ZNF492Q9P255 531 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 VAX2Q9UIW0 290 aa7.54□□□□□ -1.2
SKA1-204ENST00000488454 M0R2Z0 102 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 SPRY2O43597 315 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 DEFB135Q30KP9 77 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 AMTNQ6UX39 209 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 CCDC28AQ8IWP9 274 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 LYPD6BQ8NI32 183 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 TMEM208Q9BTX3 173 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 EIF5A2Q9GZV4 153 aaKnown RBP7.53□□□□□ -1.2
SKA1-204ENST00000488454 TP53TG1Q9Y2A0 90 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 GOLT1BQ9Y3E0 138 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 LENEPQ9Y5L5 61 aa7.53□□□□□ -1.2
SKA1-204ENST00000488454 TRBV7-9A0A0J9YWB2 115 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 RBFOX3A6NFN3 312 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 J3KRW8 73 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 PDE6DO43924 150 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 INSP01308 110 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 S100A9P06702 114 aaKnown RBP7.52□□□□□ -1.21
SKA1-204ENST00000488454 GPX1P07203 203 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 NMBP08949 121 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 GIG44P09565 113 aaPredicted RBP7.52□□□□□ -1.21
SKA1-204ENST00000488454 BCL2P10415 239 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 AKR1C3P42330 323 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 UBE2G1P62253 170 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 MEF2BQ02080 365 aaPredicted RBP7.52□□□□□ -1.21
SKA1-204ENST00000488454 SAPCD1Q5SSQ6 148 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 PRNTQ86SH4 94 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 TMEM75Q8N9X5 138 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 PCNPQ8WW12 178 aaKnown RBP7.52□□□□□ -1.21
SKA1-204ENST00000488454 RNF183Q96D59 192 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 SGK494Q96LW2 274 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 IGF2BP2-AS1Q96M15 143 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 TM2D3Q9BRN9 247 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 AP5S1Q9NUS5 200 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 PSG8Q9UQ74 426 aa7.52□□□□□ -1.21
SKA1-204ENST00000488454 TRAV12-2A0A075B6T6 113 aa7.51□□□□□ -1.21
SKA1-204ENST00000488454 IGHV3OR16-12A0A075B7B8 117 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms