RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 RNF182Q8N6D2 247 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 OR1N2Q8NGR9 330 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 RAX2Q96IS3 184 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 SRD5A3Q9H8P0 318 aa10.74□□□□□ -0.69
CUX1-209ENST00000487284 SMIM27A0A1W2PRY6 76 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 ZNF705GA8MUZ8 300 aaPredicted RBP10.73□□□□□ -0.69
CUX1-209ENST00000487284 ZNF705FA8MVS1 300 aaPredicted RBP10.73□□□□□ -0.69
CUX1-209ENST00000487284 LINC01619G3V211 115 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 GATCO43716 136 aaKnown RBP10.73□□□□□ -0.69
CUX1-209ENST00000487284 EDN2P20800 178 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 LINC00322Q6ZN03 302 aaPredicted RBP10.73□□□□□ -0.69
CUX1-209ENST00000487284 COX8CQ7Z4L0 72 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 DPF1Q92782 380 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 NRN1Q9NPD7 142 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 VWFP04275 2813 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 LOC105371267A0A1B0GV96 52 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 PRB4P10163 310 aaPredicted RBP10.73□□□□□ -0.69
CUX1-209ENST00000487284 SLURP1P55000 103 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 SYNJ2BPP57105 145 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 KLF5Q13887 457 aaPredicted RBP10.73□□□□□ -0.69
CUX1-209ENST00000487284 CT83Q5H943 113 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 GBGT1Q8N5D6 347 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 ZC2HC1AQ96GY0 325 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 C16orf92Q96LL3 132 aa10.73□□□□□ -0.69
CUX1-209ENST00000487284 PRAC2D3DTV9 90 aa10.72□□□□□ -0.69
CUX1-209ENST00000487284 NPIPB6E9PJ23 425 aa10.72□□□□□ -0.69
CUX1-209ENST00000487284 CCL24O00175 119 aa10.72□□□□□ -0.69
CUX1-209ENST00000487284 FHL3Q13643 280 aa10.72□□□□□ -0.69
CUX1-209ENST00000487284 SAPCD1Q5SSQ6 148 aa10.72□□□□□ -0.69
CUX1-209ENST00000487284 TCF24Q7RTU0 167 aa10.72□□□□□ -0.69
CUX1-209ENST00000487284 PRR25Q96S07 402 aa10.72□□□□□ -0.69
CUX1-209ENST00000487284 VGLL1Q99990 258 aa10.72□□□□□ -0.69
CUX1-209ENST00000487284 C12orf54Q6X4T0 127 aa10.71□□□□□ -0.69
CUX1-209ENST00000487284 ZFP82Q8N141 532 aa10.71□□□□□ -0.69
CUX1-209ENST00000487284 C3orf56Q8N813 242 aa10.71□□□□□ -0.69
CUX1-209ENST00000487284 ZNF747Q9BV97 191 aa10.71□□□□□ -0.69
CUX1-209ENST00000487284 RPP21Q9H633 154 aaKnown RBP10.71□□□□□ -0.69
CUX1-209ENST00000487284 C2orf70A6NJV1 201 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 PHOX2AO14813 284 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 CA1P00915 261 aaPredicted RBP10.7□□□□□ -0.7
CUX1-209ENST00000487284 P01737 135 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 TRGC2P03986 189 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 SAMD13Q5VXD3 122 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 OR4B1Q8NGF8 309 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 C20orf173Q96LM9 149 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 C8orf49Q96NF6 230 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 ASCL2Q99929 193 aa10.7□□□□□ -0.7
CUX1-209ENST00000487284 CBLN1P23435 193 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 RPL11P62913 178 aaKnown RBP10.69□□□□□ -0.7
CUX1-209ENST00000487284 C9orf47Q6ZRZ4 202 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 Q8TAT8 98 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 TSKUQ8WUA8 353 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 DLX4Q92988 240 aaPredicted RBP10.69□□□□□ -0.7
CUX1-209ENST00000487284 DAZAP1Q96EP5 407 aaKnown RBP10.69□□□□□ -0.7
CUX1-209ENST00000487284 CT45A10P0DMU9 189 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 CRIP1P50238 77 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 TCL1AP56279 114 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 MDFIQ99750 246 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 NDFIP1Q9BT67 221 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 AGPAT4-IT1Q9H0P7 198 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 PPP1R14DQ9NXH3 145 aa10.69□□□□□ -0.7
CUX1-209ENST00000487284 IZUMO1RA6ND01 250 aa10.68□□□□□ -0.7
CUX1-209ENST00000487284 A8MWL6 223 aa10.68□□□□□ -0.7
CUX1-209ENST00000487284 RPL19P84098 196 aaKnown RBP10.68□□□□□ -0.7
CUX1-209ENST00000487284 ERCC8Q13216 396 aa10.68□□□□□ -0.7
CUX1-209ENST00000487284 ACTL10Q5JWF8 245 aa10.68□□□□□ -0.7
CUX1-209ENST00000487284 ZNF738Q8NE65 137 aa10.68□□□□□ -0.7
CUX1-209ENST00000487284 DCANP1Q8TF63 244 aa10.68□□□□□ -0.7
CUX1-209ENST00000487284 GPR61Q9BZJ8 451 aa10.68□□□□□ -0.7
CUX1-209ENST00000487284 GFRA4Q9GZZ7 299 aa10.68□□□□□ -0.7
CUX1-209ENST00000487284 FAM231BA6NCW3 169 aa10.67□□□□□ -0.7
CUX1-209ENST00000487284 OVOL1O14753 267 aa10.67□□□□□ -0.7
CUX1-209ENST00000487284 ZNF138P52744 262 aa10.67□□□□□ -0.7
CUX1-209ENST00000487284 ADAMTSL5Q6ZMM2 481 aa10.67□□□□□ -0.7
CUX1-209ENST00000487284 FRZBQ92765 325 aa10.67□□□□□ -0.7
CUX1-209ENST00000487284 NEU1Q99519 415 aa10.67□□□□□ -0.7
CUX1-209ENST00000487284 NAT8BQ9UHF3 227 aa10.67□□□□□ -0.7
CUX1-209ENST00000487284 TRRAPQ9Y4A5 3859 aa10.67□□□□□ -0.7
CUX1-209ENST00000487284 IGKV3-7A0A075B6H7 116 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 M0QZ24 198 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BKO60814 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 PF4P02776 101 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BJP06899 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BOP23527 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BBP33778 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BDP58876 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BCP62807 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST2H2BEQ16778 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 SMUG1Q53HV7 270 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.66□□□□□ -0.7
CUX1-209ENST00000487284 FAM162BQ5T6X4 162 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 TMEM78Q5T7P6 136 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 SHISA2Q6UWI4 295 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 NUP35Q8NFH5 326 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 OR2D3Q8NGH3 330 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BHQ93079 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BNQ99877 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 HIST1H2BMQ99879 126 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 PEMTQ9UBM1 199 aa10.66□□□□□ -0.7
CUX1-209ENST00000487284 LENEPQ9Y5L5 61 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms