RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 GPX1P07203 203 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 TPT1P13693 172 aaKnown RBP5.87□□□□□ -1.47
USP40-216ENST00000485943 LINC00310P59036 64 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 ZFP69Q49AA0 526 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 BAP18Q8IXM2 172 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 LYPD1Q8N2G4 141 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 EXOC3-AS1Q8N2X6 119 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 RPP25LQ8N5L8 163 aaKnown RBP5.87□□□□□ -1.47
USP40-216ENST00000485943 Q9H3A6 140 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 WFDC1Q9HC57 220 aa5.87□□□□□ -1.47
USP40-216ENST00000485943 TRAV8-2A0A0B4J237 113 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 PGPA6NDG6 321 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 F6UZH7 168 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 BCL2L11O43521 198 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 SPART-AS1P0CW21 52 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 ARL14EPLP0DKL9 152 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 PRB4P10163 310 aaPredicted RBP5.86□□□□□ -1.47
USP40-216ENST00000485943 HTN3P15516 51 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 PPT1P50897 306 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 ZNF345Q14585 488 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 Q5BKY6 102 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 LINC00477Q96M19 166 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 SH3BGRL3Q9H299 93 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 C11orf68Q9H3H3 251 aaKnown RBP5.86□□□□□ -1.47
USP40-216ENST00000485943 OTORQ9NRC9 128 aa5.86□□□□□ -1.47
USP40-216ENST00000485943 DNAH3Q8TD57 4116 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 IGKV2-40A0A087WW87 121 aaPredicted RBP5.85□□□□□ -1.47
USP40-216ENST00000485943 CTXND1A0A1B0GTU2 59 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 RNF222A6NCQ9 220 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 CBY3A6NI87 242 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 HMSDA8MTL9 139 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 UMAD1C9J7I0 102 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 C11orf94C9JXX5 98 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 M0R3E3 92 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 IGKV2D-40P01614 121 aaPredicted RBP5.85□□□□□ -1.47
USP40-216ENST00000485943 GYPEP15421 78 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 DAD1P61803 113 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 RNF151Q2KHN1 245 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 GAGE13Q4V321 117 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 CASC10Q5T4H9 136 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 CST9LP1Q5W188 147 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 KCNRGQ8N5I3 272 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 FAM213BQ8TBF2 198 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 PHLDA1Q8WV24 401 aaPredicted RBP5.85□□□□□ -1.47
USP40-216ENST00000485943 PHYHIPLQ96FC7 376 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 C16orf74Q96GX8 76 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 C20orf144Q9BQM9 153 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 EDA2RQ9HAV5 297 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 NAGKQ9UJ70 344 aa5.85□□□□□ -1.47
USP40-216ENST00000485943 TRAV10A0A0B4J240 114 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 TRAV12-3A0A0B4J271 114 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 SERTM2A0A1B0GWG4 89 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 C7orf71A4D174 169 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 MAP1LC3B2A6NCE7 125 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 H7BYZ3 331 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 MRPS12O15235 138 aaKnown RBP5.84□□□□□ -1.47
USP40-216ENST00000485943 EIF3GO75821 320 aaKnown RBP eCLIP5.84□□□□□ -1.47
USP40-216ENST00000485943 MALP21145 153 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 GCHFRP30047 84 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 RNASE4P34096 147 aaKnown RBP5.84□□□□□ -1.47
USP40-216ENST00000485943 TAS2R60P59551 318 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 NANOS2P60321 138 aaKnown RBP5.84□□□□□ -1.47
USP40-216ENST00000485943 UBE2G2P60604 165 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 UBE2G1P62253 170 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 ERCC8Q13216 396 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 GOLT1AQ6ZVE7 132 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 TMUB2Q71RG4 321 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 C2CD4CQ8TF44 421 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 FXYD5Q96DB9 178 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 SAT2Q96F10 170 aaPredicted RBP5.84□□□□□ -1.47
USP40-216ENST00000485943 NKX6-2Q9C056 277 aaPredicted RBP5.84□□□□□ -1.47
USP40-216ENST00000485943 MAP1LC3BQ9GZQ8 125 aa5.84□□□□□ -1.47
USP40-216ENST00000485943 PRKDCP78527 4128 aaKnown RBP5.84□□□□□ -1.48
USP40-216ENST00000485943 A0A1B0GV50 99 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 ZNF705GA8MUZ8 300 aaPredicted RBP5.83□□□□□ -1.48
USP40-216ENST00000485943 ZNF705EA8MWA4 302 aaPredicted RBP5.83□□□□□ -1.48
USP40-216ENST00000485943 IGLL5B9A064 214 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 NPIPB6E9PJ23 425 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 STAG3L2P0CL84 134 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 STAG3L3P0CL85 134 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 DEFB130BP0DP73 79 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 DEFB130AP0DP74 79 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 ZNF138P52744 262 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 FGF8P55075 233 aaPredicted RBP5.83□□□□□ -1.48
USP40-216ENST00000485943 FAM159AQ6UWV7 190 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 SSX7Q7RTT5 188 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 C5orf17Q8NAS9 161 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 SFT2D1Q8WV19 159 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 FAM167A-AS1Q96KT0 104 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 ODF3Q96PU9 254 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 NEU1Q99519 415 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 PYGO2Q9BRQ0 406 aa5.83□□□□□ -1.48
USP40-216ENST00000485943 YTHDF2Q9Y5A9 579 aaKnown RBP5.83□□□□□ -1.48
USP40-216ENST00000485943 TIMM8BQ9Y5J9 83 aaPredicted RBP5.83□□□□□ -1.48
USP40-216ENST00000485943 DEFB131BA0A096LNP1 70 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 RBAKDNA6NC62 111 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 IFNA1P01562 189 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 SEC11BP0C7V7 166 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 CT45A10P0DMU9 189 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 FAM222AQ5U5X8 452 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms