RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 SUMO1P63165 101 aaKnown RBP12.09□□□□□ -0.47
TRIM54-203ENST00000485306 CST9LP1Q5W188 147 aa12.09□□□□□ -0.47
TRIM54-203ENST00000485306 FOXI2Q6ZQN5 318 aa12.09□□□□□ -0.47
TRIM54-203ENST00000485306 EXOC3-AS1Q8N2X6 119 aa12.09□□□□□ -0.47
TRIM54-203ENST00000485306 RNF182Q8N6D2 247 aa12.09□□□□□ -0.47
TRIM54-203ENST00000485306 RPUSD4Q96CM3 377 aaKnown RBP12.09□□□□□ -0.47
TRIM54-203ENST00000485306 C20orf173Q96LM9 149 aa12.09□□□□□ -0.47
TRIM54-203ENST00000485306 YTHDF2Q9Y5A9 579 aaKnown RBP12.09□□□□□ -0.47
TRIM54-203ENST00000485306 GGTLC3B5MD39 225 aa12.08□□□□□ -0.48
TRIM54-203ENST00000485306 NDUFS6O75380 124 aaKnown RBP12.08□□□□□ -0.48
TRIM54-203ENST00000485306 IGFL4Q6B9Z1 124 aa12.08□□□□□ -0.48
TRIM54-203ENST00000485306 EBLN2Q6P2I7 272 aa12.08□□□□□ -0.48
TRIM54-203ENST00000485306 PHLDA1Q8WV24 401 aaPredicted RBP12.08□□□□□ -0.48
TRIM54-203ENST00000485306 HIST1H2BAQ96A08 127 aa12.08□□□□□ -0.48
TRIM54-203ENST00000485306 RYR2Q92736 4967 aa12.07□□□□□ -0.48
TRIM54-203ENST00000485306 F6UZH7 168 aa12.07□□□□□ -0.48
TRIM54-203ENST00000485306 M0R3E3 92 aa12.07□□□□□ -0.48
TRIM54-203ENST00000485306 SLC25A5P05141 298 aaKnown RBP12.07□□□□□ -0.48
TRIM54-203ENST00000485306 HLA-DMBP28068 263 aa12.07□□□□□ -0.48
TRIM54-203ENST00000485306 CCDC28AQ8IWP9 274 aa12.07□□□□□ -0.48
TRIM54-203ENST00000485306 C1QTNF4Q9BXJ3 329 aa12.07□□□□□ -0.48
TRIM54-203ENST00000485306 SAV1Q9H4B6 383 aaPredicted RBP12.07□□□□□ -0.48
TRIM54-203ENST00000485306 VAX2Q9UIW0 290 aa12.07□□□□□ -0.48
TRIM54-203ENST00000485306 EPDR1Q9UM22 224 aa12.07□□□□□ -0.48
TRIM54-203ENST00000485306 LOC102723971A0A1B0GUV8 181 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 RBAKDNA6NC62 111 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 RBFOX3A6NFN3 312 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 FBLL1A6NHQ2 334 aaKnown RBP12.06□□□□□ -0.48
TRIM54-203ENST00000485306 C11orf94C9JXX5 98 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 DUSP14O95147 198 aaKnown RBP12.06□□□□□ -0.48
TRIM54-203ENST00000485306 LY6G6CO95867 125 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 GIG44P09565 113 aaPredicted RBP12.06□□□□□ -0.48
TRIM54-203ENST00000485306 MIFP14174 115 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 OR8A1Q8NGG7 326 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 OR10J6PQ8NGY7 276 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 PCNPQ8WW12 178 aaKnown RBP12.06□□□□□ -0.48
TRIM54-203ENST00000485306 FAM210AQ96ND0 272 aa12.06□□□□□ -0.48
TRIM54-203ENST00000485306 A0A0J9YX75 114 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 ZNF705FA8MVS1 300 aaPredicted RBP12.05□□□□□ -0.48
TRIM54-203ENST00000485306 DIRC3C9JPN6 131 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 K7EQM0 130 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 DEFB4AO15263 64 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 TCRAP04437 139 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 HLA-DRB4P13762 266 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 NANOS2P60321 138 aaKnown RBP12.05□□□□□ -0.48
TRIM54-203ENST00000485306 MEF2BQ02080 365 aaPredicted RBP12.05□□□□□ -0.48
TRIM54-203ENST00000485306 ZNF506Q5JVG8 444 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 LINC00476Q8WZB0 136 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 CLUHP3Q96NS8 147 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 SMDT1Q9H4I9 107 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 HLA-DRB4X5D2U9 266 aa12.05□□□□□ -0.48
TRIM54-203ENST00000485306 SACSQ9NZJ4 4579 aa12.04□□□□□ -0.48
TRIM54-203ENST00000485306 H3BMM0 161 aa12.04□□□□□ -0.48
TRIM54-203ENST00000485306 PDE6DO43924 150 aa12.04□□□□□ -0.48
TRIM54-203ENST00000485306 ATP5G3P48201 142 aa12.04□□□□□ -0.48
TRIM54-203ENST00000485306 ATG101Q9BSB4 218 aa12.04□□□□□ -0.48
TRIM54-203ENST00000485306 MED9Q9NWA0 146 aa12.04□□□□□ -0.48
TRIM54-203ENST00000485306 DEFB1P60022 68 aa12.03□□□□□ -0.48
TRIM54-203ENST00000485306 GDF5OSQ5U4N7 250 aa12.03□□□□□ -0.48
TRIM54-203ENST00000485306 CYB561D1Q8N8Q1 229 aa12.03□□□□□ -0.48
TRIM54-203ENST00000485306 Q8NAQ8 132 aa12.03□□□□□ -0.48
TRIM54-203ENST00000485306 CSNK1G2-AS1Q8NCQ2 148 aa12.03□□□□□ -0.48
TRIM54-203ENST00000485306 LINC00477Q96M19 166 aa12.03□□□□□ -0.48
TRIM54-203ENST00000485306 EIF5A2Q9GZV4 153 aaKnown RBP12.03□□□□□ -0.48
TRIM54-203ENST00000485306 IGHV4-28A0A0C4DH34 117 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 A8MTW9 85 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 PRAC2D3DTV9 90 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 NPIPB6E9PJ23 425 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 PEX7O00628 323 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 HIST1H1AQ02539 215 aaPredicted RBP12.02□□□□□ -0.49
TRIM54-203ENST00000485306 PEA15Q15121 130 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 TOR2AQ5JU69 321 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 C9orf47Q6ZRZ4 202 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 GOLT1AQ6ZVE7 132 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 C11orf52Q96A22 123 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 PPP1R14DQ9NXH3 145 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 XCL2Q9UBD3 114 aa12.02□□□□□ -0.49
TRIM54-203ENST00000485306 DNAH1Q9P2D7 4330 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 TRBV7-9A0A0J9YWB2 115 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 RAB19A4D1S5 217 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 F6UB75 175 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 TMEM250H0YL14 139 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 S100A9P06702 114 aaKnown RBP12.01□□□□□ -0.49
TRIM54-203ENST00000485306 CNN1P51911 297 aaKnown RBP12.01□□□□□ -0.49
TRIM54-203ENST00000485306 GNG5P63218 68 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 TMEM78Q5T7P6 136 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 TMEM75Q8N9X5 138 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 C2CD4CQ8TF44 421 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 ODF3Q96PU9 254 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 RPH3ALQ9UNE2 315 aa12.01□□□□□ -0.49
TRIM54-203ENST00000485306 IGKV3-20P01619 116 aa12□□□□□ -0.49
TRIM54-203ENST00000485306 RBMY1A1P0DJD3 496 aaKnown RBP12□□□□□ -0.49
TRIM54-203ENST00000485306 RBMY1CP0DJD4 496 aa12□□□□□ -0.49
TRIM54-203ENST00000485306 AKR1C3P42330 323 aa12□□□□□ -0.49
TRIM54-203ENST00000485306 TCTAP57738 103 aa12□□□□□ -0.49
TRIM54-203ENST00000485306 RBMY1FQ15415 496 aaKnown RBP12□□□□□ -0.49
TRIM54-203ENST00000485306 KLF12Q9Y4X4 402 aa12□□□□□ -0.49
TRIM54-203ENST00000485306 LENEPQ9Y5L5 61 aa12□□□□□ -0.49
TRIM54-203ENST00000485306 X6R8D5 127 aa12□□□□□ -0.49
TRIM54-203ENST00000485306 IGKV2-40A0A087WW87 121 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms