RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 CLPSL1A2RUU4 121 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 RHODO00212 210 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 RPL35AP18077 110 aaKnown RBP7.12□□□□□ -1.27
SYNE1-224ENST00000478916 SAA4P35542 130 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 C12orf74Q32Q52 190 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 NTN5Q8WTR8 489 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-224ENST00000478916 Q96MF0 132 aa7.12□□□□□ -1.27
SYNE1-224ENST00000478916 TRBV25-1A0A075B6N4 114 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 TMEM213A2RRL7 107 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 PSPNO60542 156 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 NDUFA12Q9UI09 145 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 MGAMO43451 1857 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 IGKV1-27A0A075B6S5 117 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 ATOX1O00244 68 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 PNRC2Q9NPJ4 139 aaKnown RBP7.11□□□□□ -1.27
SYNE1-224ENST00000478916 A0A1W2PPI3 338 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 PI4KAP42356 2102 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 THAP8Q8NA92 274 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 HEATR5AQ86XA9 2040 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 FNDC1Q4ZHG4 1894 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-224ENST00000478916 CHKB-CPT1BH3BT56 60 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 NPYP01303 97 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 TRBV6-6A0A0A6YYG2 114 aa7.11□□□□□ -1.27
SYNE1-224ENST00000478916 MRPL51Q4U2R6 128 aaKnown RBP7.11□□□□□ -1.27
SYNE1-224ENST00000478916 F8VRH5 84 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 IGHV2-5P01817 119 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 LINC00479Q96M42 142 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 J3QLI3 93 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 SMIM27A0A1W2PRY6 76 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 F6UB75 175 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 UBE2E1P51965 193 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 IGKV1D-17A0A075B6S4 117 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 RS1O15537 224 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 KLF5Q13887 457 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-224ENST00000478916 WFDC9Q8NEX5 89 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 SHANK2-AS3Q9BTD1 123 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 PTPRDP23468 1912 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 BAALC-AS2P0C853 105 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 IGFL4Q6B9Z1 124 aa7.1□□□□□ -1.27
SYNE1-224ENST00000478916 MST1LQ2TV78 715 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 UBE2E2Q96LR5 201 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 DAZ1Q9NQZ3 744 aaKnown RBP7.09□□□□□ -1.27
SYNE1-224ENST00000478916 SIP14410 1827 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 FOXL2NBQ6ZUU3 175 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 C8orf49Q96NF6 230 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 ORMDL1Q9P0S3 153 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 SIGLEC9Q9Y336 463 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 RNASE2P10153 161 aaKnown RBP7.09□□□□□ -1.27
SYNE1-224ENST00000478916 LYPD2Q6UXB3 125 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 EP300Q09472 2414 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-224ENST00000478916 PLXNA3P51805 1871 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 YPEL3P61236 119 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-224ENST00000478916 MRPL35Q9NZE8 188 aaKnown RBP7.09□□□□□ -1.27
SYNE1-224ENST00000478916 MYO7BQ6PIF6 2116 aa7.09□□□□□ -1.27
SYNE1-224ENST00000478916 AMTNQ6UX39 209 aa7.09□□□□□ -1.28
SYNE1-224ENST00000478916 Q6P435 159 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 PRSS33Q8NF86 280 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 INTS1Q8N201 2190 aaKnown RBP7.08□□□□□ -1.28
SYNE1-224ENST00000478916 AKAP6Q13023 2319 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 E9PQ18 207 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 J3QQQ9 107 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 CFPP27918 469 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 SIGLEC8Q9NYZ4 499 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 IGLC7A0M8Q6 106 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 LY6HO94772 140 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 SMIM2Q9BVW6 85 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 C9JQL5 133 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 A0A0B4J2C4 111 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 IGHV1-69DA0A0B4J2H0 117 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 DKK1O94907 266 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 IGHV1-69P01742 117 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 HERVK_113P63121 156 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 Q8TCH9 128 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 CNOT1A5YKK6 2376 aaKnown RBP7.08□□□□□ -1.28
SYNE1-224ENST00000478916 MYLKQ15746 1914 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 A0A1B0GX51 115 aa7.08□□□□□ -1.28
SYNE1-224ENST00000478916 LINC00473A8K010 186 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 LINC01619G3V211 115 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 CCL25O15444 150 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 ANXA2RQ3ZCQ2 193 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 C10orf91Q5T1B1 145 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 TICRRQ7Z2Z1 1910 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 ANK1P16157 1881 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 LY6G6EA0A0G2JKS1 128 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 CFC1BP0CG36 223 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 CFC1P0CG37 223 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 RHPN1-AS1Q9BWJ2 59 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 U3KQA8 63 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 IGHV2-70DA0A0C4DH43 119 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 Q6ZS49 121 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 BAALCQ8WXS3 180 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 V9GYV3 84 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 GVINP1Q7Z2Y8 2422 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 NXPH4O95158 308 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 RUSC1-AS1Q66K80 236 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 FAM231DQ6ZW35 169 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 HS3ST6Q96QI5 342 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 SDHAF1A6NFY7 115 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 PIP4P1Q86T03 277 aa7.07□□□□□ -1.28
SYNE1-224ENST00000478916 VWA8A3KMH1 1905 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms