RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 TRAV12-3A0A0B4J271 114 aa10.17□□□□□ -0.78
VAMP4-203ENST00000474047 HTN3P15516 51 aa10.17□□□□□ -0.78
VAMP4-203ENST00000474047 KIR3DS1Q14943 382 aa10.17□□□□□ -0.78
VAMP4-203ENST00000474047 GFI1BQ5VTD9 330 aa10.17□□□□□ -0.78
VAMP4-203ENST00000474047 CMTM2Q8TAZ6 248 aa10.17□□□□□ -0.78
VAMP4-203ENST00000474047 LINC00476Q8WZB0 136 aa10.17□□□□□ -0.78
VAMP4-203ENST00000474047 SMLR1H3BR10 107 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 TAAR5O14804 337 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 SLC25A5P05141 298 aaKnown RBP10.16□□□□□ -0.78
VAMP4-203ENST00000474047 GPX1P07203 203 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 AZU1P20160 251 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 C9orf47Q6ZRZ4 202 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 RXFP4Q8TDU9 374 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 C16orf74Q96GX8 76 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 ACTR3CQ9C0K3 210 aaPredicted RBP10.16□□□□□ -0.78
VAMP4-203ENST00000474047 SH3BGRL3Q9H299 93 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 PLA2G2EQ9NZK7 142 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 PGPA6NDG6 321 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 RNASE4P34096 147 aaKnown RBP10.16□□□□□ -0.78
VAMP4-203ENST00000474047 ZNF493Q6ZR52 646 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 RAB24Q969Q5 203 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 VGLL1Q99990 258 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 RPH3ALQ9UNE2 315 aa10.16□□□□□ -0.78
VAMP4-203ENST00000474047 IGHV4-4A0A075B6R2 117 aa10.15□□□□□ -0.78
VAMP4-203ENST00000474047 C7orf71A4D174 169 aa10.15□□□□□ -0.78
VAMP4-203ENST00000474047 LYRM9A8MSI8 78 aa10.15□□□□□ -0.78
VAMP4-203ENST00000474047 ARL14EPLP0DKL9 152 aa10.15□□□□□ -0.78
VAMP4-203ENST00000474047 DEFB130BP0DP73 79 aa10.15□□□□□ -0.78
VAMP4-203ENST00000474047 DEFB130AP0DP74 79 aa10.15□□□□□ -0.78
VAMP4-203ENST00000474047 OTORQ9NRC9 128 aa10.15□□□□□ -0.78
VAMP4-203ENST00000474047 STARD9Q9P2P6 4700 aa10.15□□□□□ -0.78
VAMP4-203ENST00000474047 ZNF138P52744 262 aa10.14□□□□□ -0.79
VAMP4-203ENST00000474047 IQCF2Q8IXL9 164 aa10.14□□□□□ -0.79
VAMP4-203ENST00000474047 TIMM8BQ9Y5J9 83 aaPredicted RBP10.14□□□□□ -0.79
VAMP4-203ENST00000474047 RBAKDNA6NC62 111 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 G3V3Q6 166 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 CXorf1O96002 111 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 AKR1C8PQ5T2L2 129 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 TMEM263Q8WUH6 116 aaKnown RBP10.13□□□□□ -0.79
VAMP4-203ENST00000474047 PYGO2Q9BRQ0 406 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 NDUFAF3Q9BU61 184 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 ZNF492Q9P255 531 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 SNURFLB1AK76 121 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 DIRC3C9JPN6 131 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 STAG3L2P0CL84 134 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 STAG3L3P0CL85 134 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 GCHFRP30047 84 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 LGALS9CQ6DKI2 356 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 NOP10Q9NPE3 64 aaKnown RBP10.13□□□□□ -0.79
VAMP4-203ENST00000474047 APLNQ9ULZ1 77 aa10.13□□□□□ -0.79
VAMP4-203ENST00000474047 KLLNB2CW77 178 aa10.12□□□□□ -0.79
VAMP4-203ENST00000474047 NMBP08949 121 aa10.12□□□□□ -0.79
VAMP4-203ENST00000474047 CRISP2P16562 243 aa10.12□□□□□ -0.79
VAMP4-203ENST00000474047 CD300CQ08708 224 aa10.12□□□□□ -0.79
VAMP4-203ENST00000474047 BTN1A1Q13410 526 aa10.12□□□□□ -0.79
VAMP4-203ENST00000474047 Q8TAT8 98 aa10.12□□□□□ -0.79
VAMP4-203ENST00000474047 ARPC5LQ9BPX5 153 aa10.12□□□□□ -0.79
VAMP4-203ENST00000474047 TMEM167BQ9NRX6 74 aa10.12□□□□□ -0.79
VAMP4-203ENST00000474047 CBY3A6NI87 242 aa10.11□□□□□ -0.79
VAMP4-203ENST00000474047 RGS13O14921 159 aa10.11□□□□□ -0.79
VAMP4-203ENST00000474047 RNASE8Q8TDE3 154 aaKnown RBP10.11□□□□□ -0.79
VAMP4-203ENST00000474047 FAM19A4Q96LR4 140 aa10.11□□□□□ -0.79
VAMP4-203ENST00000474047 A0A0D9SG52 128 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 GOLT1AQ6ZVE7 132 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 TRBV7-9A0A0J9YWB2 115 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 CTXND1A0A1B0GTU2 59 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 KANTRA0A1W2PQU2 76 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 PLAC8L1A1L4L8 177 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 HMSDA8MTL9 139 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 K7EQM0 130 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 ZNF345Q14585 488 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 KCNRGQ8N5I3 272 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 EIF4E3Q8N5X7 224 aaKnown RBP10.1□□□□□ -0.79
VAMP4-203ENST00000474047 ZFAND2AQ8N6M9 145 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 ARL6IP6Q8N6S5 226 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 FAM210BQ96KR6 192 aa10.1□□□□□ -0.79
VAMP4-203ENST00000474047 F5H768 121 aa10.09□□□□□ -0.79
VAMP4-203ENST00000474047 ZNF324O75467 553 aaPredicted RBP10.09□□□□□ -0.79
VAMP4-203ENST00000474047 ATP5G1P05496 136 aa10.09□□□□□ -0.79
VAMP4-203ENST00000474047 ATP5G3P48201 142 aa10.09□□□□□ -0.79
VAMP4-203ENST00000474047 ZNF680Q8NEM1 530 aa10.09□□□□□ -0.79
VAMP4-203ENST00000474047 ST6GAL2Q96JF0 529 aa10.09□□□□□ -0.79
VAMP4-203ENST00000474047 CYTL1Q9NRR1 136 aa10.09□□□□□ -0.79
VAMP4-203ENST00000474047 LENEPQ9Y5L5 61 aa10.09□□□□□ -0.79
VAMP4-203ENST00000474047 PFDN1O60925 122 aa10.08□□□□□ -0.8
VAMP4-203ENST00000474047 SUMO1P63165 101 aaKnown RBP10.08□□□□□ -0.8
VAMP4-203ENST00000474047 GNG5P63218 68 aa10.08□□□□□ -0.8
VAMP4-203ENST00000474047 C5orf17Q8NAS9 161 aa10.08□□□□□ -0.8
VAMP4-203ENST00000474047 OR11H4Q8NGC9 324 aa10.08□□□□□ -0.8
VAMP4-203ENST00000474047 ZNF471Q9BX82 626 aaPredicted RBP10.08□□□□□ -0.8
VAMP4-203ENST00000474047 EIF5AP63241 154 aaKnown RBP10.07□□□□□ -0.8
VAMP4-203ENST00000474047 PRR9Q5T870 116 aa10.07□□□□□ -0.8
VAMP4-203ENST00000474047 SSX7Q7RTT5 188 aa10.07□□□□□ -0.8
VAMP4-203ENST00000474047 TMED6Q8WW62 240 aa10.07□□□□□ -0.8
VAMP4-203ENST00000474047 IGHV1OR15-1A0A075B7D0 117 aa10.07□□□□□ -0.8
VAMP4-203ENST00000474047 SERTM2A0A1B0GWG4 89 aa10.07□□□□□ -0.8
VAMP4-203ENST00000474047 GAGE12BA1L429 117 aa10.07□□□□□ -0.8
VAMP4-203ENST00000474047 GAGE7O76087 117 aa10.07□□□□□ -0.8
VAMP4-203ENST00000474047 GAGE12FP0CL80 117 aa10.07□□□□□ -0.8
VAMP4-203ENST00000474047 GAGE12GP0CL81 117 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms