RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 TM2D2Q9BX73 214 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 ONECUT1Q9UBC0 465 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 ACACAQ13085 2346 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 TMSB15BA0A087X1C1 80 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 TMEM238LA0A1B0GVL6 79 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 A6NJY4 79 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 TNFRSF6BO95407 300 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 PPP1R17O96001 155 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 APELAP0DMC3 54 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 PAX8Q06710 450 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 SRSF6Q13247 344 aaKnown RBP4.8□□□□□ -1.64
HERC4-209ENST00000473533 MINOS1Q5TGZ0 78 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 MINOS1-NBL1R4GNA1 71 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 TECTAO75443 2155 aa4.8□□□□□ -1.64
HERC4-209ENST00000473533 M0R3E3 92 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 SNAI2O43623 268 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 HES1Q14469 280 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 C1orf122Q6ZSJ8 110 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 LY6G5BQ8NDX9 201 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 PRSS33Q8NF86 280 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 MRAP2Q96G30 205 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 ABHD17AQ96GS6 310 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 ATP6V0BQ99437 205 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 MCRIP2Q9BUT9 160 aaKnown RBP4.79□□□□□ -1.64
HERC4-209ENST00000473533 CHTOPQ9Y3Y2 248 aaKnown RBP4.79□□□□□ -1.64
HERC4-209ENST00000473533 ASH1LQ9NR48 2969 aaKnown RBP4.79□□□□□ -1.64
HERC4-209ENST00000473533 TMEM238C9JI98 176 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 E7EQL1 145 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 NDUFS8O00217 210 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 FCN3O75636 299 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 EGR2P11161 476 aaPredicted RBP4.79□□□□□ -1.64
HERC4-209ENST00000473533 SLC25A16P16260 332 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 LAGE3Q14657 143 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 ODF1Q14990 250 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 ORMDL2Q53FV1 153 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 LHFPL4Q7Z7J7 247 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 CEND1Q8N111 149 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 MTURNQ8N3F0 131 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 C17orf77Q96MU5 243 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 VGLL1Q99990 258 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 VCX2Q9H322 139 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 HILPDAQ9Y5L2 63 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 TRAV12-1A0A0B4J245 112 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 SPAARA0A1B0GVQ0 90 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 TMEM78Q5T7P6 136 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 SAMD13Q5VXD3 122 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 RUSC1-AS1Q66K80 236 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 RAB37Q96AX2 223 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 LENEPQ9Y5L5 61 aa4.79□□□□□ -1.64
HERC4-209ENST00000473533 CEP295Q9C0D2 2601 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 IGKV2-40A0A087WW87 121 aaPredicted RBP4.78□□□□□ -1.64
HERC4-209ENST00000473533 IGKV2D-40P01614 121 aaPredicted RBP4.78□□□□□ -1.64
HERC4-209ENST00000473533 CLEC3BP05452 202 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 PRB4P10163 310 aaPredicted RBP4.78□□□□□ -1.64
HERC4-209ENST00000473533 RPL24P83731 157 aaKnown RBP4.78□□□□□ -1.64
HERC4-209ENST00000473533 PRR31Q5SQ13 230 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 ZNF502Q8TBZ5 544 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 SIGMAR1Q99720 223 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 FOXC2Q99958 501 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 PRTN3P24158 256 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 JMJD8Q96S16 334 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 SPG11Q96JI7 2443 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 COL6A6A6NMZ7 2263 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 A0A087WX48 190 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.78□□□□□ -1.64
HERC4-209ENST00000473533 LOXL1Q08397 574 aaPredicted RBP4.78□□□□□ -1.64
HERC4-209ENST00000473533 PAPPA-AS1Q5QFB9 102 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 IL17RELQ6ZVW7 336 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 CFHR4Q92496 578 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 TP73-AS1Q9UF72 201 aa4.78□□□□□ -1.64
HERC4-209ENST00000473533 A0A1B0GV72 72 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 H7C1H1 209 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 FAM106CPP0CH98 169 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 FAM106AQ4KMX7 169 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 ZC2HC1BQ5TFG8 222 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 PCP2Q8IVA1 136 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 FAM110DQ8TAY7 271 aaPredicted RBP4.77□□□□□ -1.65
HERC4-209ENST00000473533 TMEM158Q8WZ71 300 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 RNF185Q96GF1 192 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 ZNF479Q96JC4 524 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 FANCD2OSQ96PS1 177 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 DKK2Q9UBU2 259 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 TRBV25-1A0A075B6N4 114 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 IGHV4-4A0A075B6R2 117 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 ODF3BA8MYP8 253 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 OR11H12B2RN74 326 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 EBI3Q14213 229 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 KLK9Q2XQG4 91 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 PRSS57Q6UWY2 283 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 C22orf34Q6ZV56 151 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 OR11H1Q8NG94 326 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 OR11H2Q8NH07 326 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 VKORC1Q9BQB6 163 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 KLK9Q9UKQ9 250 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 CREBBPQ92793 2442 aa4.77□□□□□ -1.65
HERC4-209ENST00000473533 E9PLD3 99 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 SAP30O75446 220 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 CD300EQ496F6 205 aaPredicted RBP4.76□□□□□ -1.65
HERC4-209ENST00000473533 FOXI2Q6ZQN5 318 aa4.76□□□□□ -1.65
HERC4-209ENST00000473533 PIP4P2Q8N4L2 257 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms