RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 IGKV1-8A0A0C4DH67 115 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 DEFB103AP81534 67 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 Q6ZS49 121 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 ARHGEF28Q8N1W1 1705 aaKnown RBP7.18□□□□□ -1.26
COL6A3-210ENST00000473258 HEATR5AQ86XA9 2040 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 IGHV5-10-1A0A0J9YXX1 117 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 SMIM10L1P0DMW3 83 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 C10orf55Q5SWW7 151 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 STPG1Q5TH74 334 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 Q6ZS92 163 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 FGFBP3Q8TAT2 258 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 Q8TCH9 128 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 SMIM10Q96HG1 83 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 ARFGEF3Q5TH69 2177 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 NSUN5P1Q3KNT7 163 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 C8orf49Q96NF6 230 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 INSL3P51460 131 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 CFAP126Q5VTH2 177 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 SHANK2-AS3Q9BTD1 123 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 MRPS12O15235 138 aaKnown RBP7.17□□□□□ -1.26
COL6A3-210ENST00000473258 ENHOQ6UWT2 76 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 COX7B2Q8TF08 81 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 AKAP12Q02952 1782 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 F8WDY8 70 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 RALGAPA1Q6GYQ0 2036 aa7.17□□□□□ -1.26
COL6A3-210ENST00000473258 IGHV1-8P0DP01 117 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 PKDREJQ9NTG1 2253 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 TMEM256-PLSCR3K7ERE1 68 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 DAZ2Q13117 558 aaKnown RBP7.16□□□□□ -1.26
COL6A3-210ENST00000473258 DAZ4Q86SG3 579 aaKnown RBP7.16□□□□□ -1.26
COL6A3-210ENST00000473258 ZNF503Q96F45 646 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 DAZ1Q9NQZ3 744 aaKnown RBP7.16□□□□□ -1.26
COL6A3-210ENST00000473258 DAZ3Q9NR90 486 aaKnown RBP7.16□□□□□ -1.26
COL6A3-210ENST00000473258 NOTCH3Q9UM47 2321 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 IGHV4-28A0A0C4DH34 117 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 TRBV27A0A0K0K1C4 114 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 MBD3L4A6NDZ8 208 aaPredicted RBP7.16□□□□□ -1.26
COL6A3-210ENST00000473258 MBD3L3A6NE82 208 aaPredicted RBP7.16□□□□□ -1.26
COL6A3-210ENST00000473258 MBD3L5A6NJ08 208 aaPredicted RBP7.16□□□□□ -1.26
COL6A3-210ENST00000473258 PRR25Q96S07 402 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 SND1-IT1Q9HBX3 110 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 GBF1Q92538 1859 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 CICQ96RK0 1608 aaPredicted RBP7.16□□□□□ -1.26
COL6A3-210ENST00000473258 TRBV6-6A0A0A6YYG2 114 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 C16orf97H3BN30 126 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 HIGD2BQ4VC39 106 aa7.16□□□□□ -1.26
COL6A3-210ENST00000473258 RNASE13Q5GAN3 156 aaKnown RBP7.15□□□□□ -1.26
COL6A3-210ENST00000473258 DLG5Q8TDM6 1919 aa7.15□□□□□ -1.26
COL6A3-210ENST00000473258 LMO1P25800 156 aa7.15□□□□□ -1.26
COL6A3-210ENST00000473258 FAM216BQ8N7L0 139 aa7.15□□□□□ -1.26
COL6A3-210ENST00000473258 MDFICQ9P1T7 246 aa7.15□□□□□ -1.26
COL6A3-210ENST00000473258 IGFL4Q6B9Z1 124 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 GAFA1Q96PS6 74 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 DYSFO75923 2080 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 NAV1Q8NEY1 1877 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 ZNF142P52746 1687 aaPredicted RBP7.14□□□□□ -1.27
COL6A3-210ENST00000473258 NDUFB1O75438 58 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 PAX8Q06710 450 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 MLANAQ16655 118 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 CADP27708 2225 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 CFHR1Q03591 330 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 CREBBPQ92793 2442 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 CSRP2Q16527 193 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 FAM19A3Q7Z5A8 133 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 NKAPP1Q8N9T2 125 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 KLK5Q9Y337 293 aaPredicted RBP7.14□□□□□ -1.27
COL6A3-210ENST00000473258 LINC00473A8K010 186 aa7.14□□□□□ -1.27
COL6A3-210ENST00000473258 NANOS2P60321 138 aaKnown RBP7.14□□□□□ -1.27
COL6A3-210ENST00000473258 ZNF407Q9C0G0 2248 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 C4orf51C9J302 202 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 UFSP1Q6NVU6 142 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 MRPL14Q6P1L8 145 aaKnown RBP7.13□□□□□ -1.27
COL6A3-210ENST00000473258 HTN3P15516 51 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 ASPHD1Q5U4P2 390 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 STHQ8IWL8 128 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 TRGV1A0A0A0MS02 117 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 WI2-2373I1.2A0A1W2PRP0 233 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 RPS28P62857 69 aaKnown RBP7.13□□□□□ -1.27
COL6A3-210ENST00000473258 SMCHD1A6NHR9 2005 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 COX7A2LO14548 114 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 BPY2O14599 106 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 P0DMU3 169 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 FAM231AP0DMU4 169 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 FAM231CP0DMU5 169 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 SPRY4Q9C004 299 aa7.13□□□□□ -1.27
COL6A3-210ENST00000473258 FANCMQ8IYD8 2048 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 IGHV3-11P01762 117 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 LILRA6Q6PI73 481 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 Q9HAA7 133 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 PLA2G2EQ9NZK7 142 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 IGKV2D-26A0A0A0MRZ7 120 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 LY6EQ16553 131 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.12□□□□□ -1.27
COL6A3-210ENST00000473258 LAMA4Q16363 1823 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 ETV2O00321 342 aaPredicted RBP7.12□□□□□ -1.27
COL6A3-210ENST00000473258 TTTY12Q9BZ98 90 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 TP73-AS1Q9UF72 201 aa7.12□□□□□ -1.27
COL6A3-210ENST00000473258 TRBV7-1A0A0A6YYK4 115 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 PF4P02776 101 aa7.11□□□□□ -1.27
COL6A3-210ENST00000473258 MIFP14174 115 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms