RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ICAM4Q14773 271 aa11.61□□□□□ -0.55
USP40-212ENST00000473191 VGLL1Q99990 258 aa11.61□□□□□ -0.55
USP40-212ENST00000473191 NMES1Q9C002 83 aa11.61□□□□□ -0.55
USP40-212ENST00000473191 WDR61Q9GZS3 305 aaKnown RBP11.61□□□□□ -0.55
USP40-212ENST00000473191 TIMM9Q9Y5J7 89 aa11.61□□□□□ -0.55
USP40-212ENST00000473191 TRAV26-1A0A087WT03 109 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 E5RGE8 158 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 INMT-MINDY4F8WBC2 141 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 ZNF324O75467 553 aaPredicted RBP11.6□□□□□ -0.55
USP40-212ENST00000473191 OR10J4P0C629 311 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 C1orf134Q5TEV5 83 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 FAM122CQ6P4D5 195 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 Q6ZTI0 123 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 ZNF575Q86XF7 245 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 CCDC28AQ8IWP9 274 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 C11orf72Q8NBR9 251 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 MRPL53Q96EL3 112 aaKnown RBP11.6□□□□□ -0.55
USP40-212ENST00000473191 TMPRSS5Q9H3S3 457 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 GSN-AS1Q9NRJ2 163 aa11.6□□□□□ -0.55
USP40-212ENST00000473191 C7orf71A4D174 169 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 KLLNB2CW77 178 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 MPDU1O75352 247 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 TNP2Q05952 138 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 RGS21Q2M5E4 152 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 FXYD5Q96DB9 178 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 ZNF503Q96F45 646 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 PHYHIPLQ96FC7 376 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 TP53TG3Q9ULZ0 132 aa11.59□□□□□ -0.55
USP40-212ENST00000473191 NBDYA0A0U1RRE5 68 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 RLN2P04090 185 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 SLC25A5P05141 298 aaKnown RBP11.58□□□□□ -0.56
USP40-212ENST00000473191 RNASE4P34096 147 aaKnown RBP11.58□□□□□ -0.56
USP40-212ENST00000473191 SSX7Q7RTT5 188 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 ZFAND2AQ8N6M9 145 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 PPP1R1CQ8WVI7 109 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 PYGO2Q9BRQ0 406 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 MARVELD1Q9BSK0 173 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 SLC25A31Q9H0C2 315 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 OR51M1Q9H341 326 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 KLF12Q9Y4X4 402 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 RYR1P21817 5038 aa11.58□□□□□ -0.56
USP40-212ENST00000473191 SNURFLB1AK76 121 aa11.57□□□□□ -0.56
USP40-212ENST00000473191 NBEAP1P0C6P0 100 aa11.57□□□□□ -0.56
USP40-212ENST00000473191 PDE6HQ13956 83 aa11.57□□□□□ -0.56
USP40-212ENST00000473191 C9orf47Q6ZRZ4 202 aa11.57□□□□□ -0.56
USP40-212ENST00000473191 Q8TAT8 98 aa11.57□□□□□ -0.56
USP40-212ENST00000473191 GNPNAT1Q96EK6 184 aaPredicted RBP11.57□□□□□ -0.56
USP40-212ENST00000473191 KRTAP1-5Q9BYS1 174 aa11.57□□□□□ -0.56
USP40-212ENST00000473191 SMIM3Q9BZL3 60 aa11.57□□□□□ -0.56
USP40-212ENST00000473191 CCL18P55774 89 aa11.56□□□□□ -0.56
USP40-212ENST00000473191 FAM3BP58499 235 aaPredicted RBP11.56□□□□□ -0.56
USP40-212ENST00000473191 ESRGQ1W209 222 aa11.56□□□□□ -0.56
USP40-212ENST00000473191 LINC00477Q96M19 166 aa11.56□□□□□ -0.56
USP40-212ENST00000473191 PRELID1Q9Y255 219 aa11.56□□□□□ -0.56
USP40-212ENST00000473191 PRAF2O60831 178 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 MPC2O95563 127 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 PTTG1O95997 202 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 CRISP2P16562 243 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 M6PRP20645 277 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 DAZ2Q13117 558 aaKnown RBP11.55□□□□□ -0.56
USP40-212ENST00000473191 RXFP4Q8TDU9 374 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 VSIG2Q96IQ7 327 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 PAXXQ9BUH6 204 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 AAMDCQ9H7C9 122 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 WFDC1Q9HC57 220 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 ZNF492Q9P255 531 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 FUT9Q9Y231 359 aa11.55□□□□□ -0.56
USP40-212ENST00000473191 GPX1P07203 203 aa11.54□□□□□ -0.56
USP40-212ENST00000473191 MED14OSP0DP75 135 aa11.54□□□□□ -0.56
USP40-212ENST00000473191 ATP5SQ99766 215 aa11.54□□□□□ -0.56
USP40-212ENST00000473191 Q9H8V8 135 aa11.54□□□□□ -0.56
USP40-212ENST00000473191 HSPB11Q9Y547 144 aa11.54□□□□□ -0.56
USP40-212ENST00000473191 LRP1BQ9NZR2 4599 aa11.53□□□□□ -0.56
USP40-212ENST00000473191 HSPG2P98160 4391 aa11.53□□□□□ -0.56
USP40-212ENST00000473191 TRGV1A0A0A0MS02 117 aa11.53□□□□□ -0.56
USP40-212ENST00000473191 RANP62826 216 aaKnown RBP11.53□□□□□ -0.56
USP40-212ENST00000473191 SOHLH1Q5JUK2 328 aa11.53□□□□□ -0.56
USP40-212ENST00000473191 FFAR4Q5NUL3 377 aa11.53□□□□□ -0.56
USP40-212ENST00000473191 C6orf223Q8N319 242 aa11.53□□□□□ -0.56
USP40-212ENST00000473191 EIF4E3Q8N5X7 224 aaKnown RBP11.53□□□□□ -0.56
USP40-212ENST00000473191 LINC00467Q9BRT7 94 aa11.53□□□□□ -0.56
USP40-212ENST00000473191 MRPL32Q9BYC8 188 aaKnown RBP11.53□□□□□ -0.56
USP40-212ENST00000473191 MBD2Q9UBB5 411 aa11.53□□□□□ -0.56
USP40-212ENST00000473191 A0A096LPF7 62 aa11.52□□□□□ -0.57
USP40-212ENST00000473191 SSNA1O43805 119 aa11.52□□□□□ -0.57
USP40-212ENST00000473191 OR7C2O60412 319 aa11.52□□□□□ -0.57
USP40-212ENST00000473191 SPINK4O60575 86 aa11.52□□□□□ -0.57
USP40-212ENST00000473191 CYCSP99999 105 aaKnown RBP11.52□□□□□ -0.57
USP40-212ENST00000473191 ANXA2RQ3ZCQ2 193 aa11.52□□□□□ -0.57
USP40-212ENST00000473191 TMEM78Q5T7P6 136 aa11.52□□□□□ -0.57
USP40-212ENST00000473191 Q9H3A6 140 aa11.52□□□□□ -0.57
USP40-212ENST00000473191 MRPL16Q9NX20 251 aaKnown RBP11.52□□□□□ -0.57
USP40-212ENST00000473191 TRGV2A0A075B6R0 118 aa11.51□□□□□ -0.57
USP40-212ENST00000473191 IGHV3-53P01767 116 aa11.51□□□□□ -0.57
USP40-212ENST00000473191 RPL12P30050 165 aaKnown RBP11.51□□□□□ -0.57
USP40-212ENST00000473191 TCL1AP56279 114 aa11.51□□□□□ -0.57
USP40-212ENST00000473191 ZNF680Q8NEM1 530 aa11.51□□□□□ -0.57
USP40-212ENST00000473191 KRTAP4-5Q9BYR2 181 aa11.51□□□□□ -0.57
USP40-212ENST00000473191 C17orf112F2Z3M2 114 aa11.5□□□□□ -0.57
USP40-212ENST00000473191 ZNF138P52744 262 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms