RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 OR4E1P0C645 316 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 ID3Q02535 119 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 SCXQ7RTU7 201 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 ZNF546Q86UE3 836 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 ZNF479Q96JC4 524 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 Q9HAA7 133 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 PSENENQ9NZ42 101 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 FNDC10F2Z333 226 aa12.19□□□□□ -0.46
SHH-205ENST00000472308 COX7A2P2O60397 106 aa12.19□□□□□ -0.46
SHH-205ENST00000472308 TMEM14EPQ6UXP3 125 aa12.19□□□□□ -0.46
SHH-205ENST00000472308 IQCF2Q8IXL9 164 aa12.19□□□□□ -0.46
SHH-205ENST00000472308 PCNPQ8WW12 178 aaKnown RBP12.19□□□□□ -0.46
SHH-205ENST00000472308 AGPAT4-IT1Q9H0P7 198 aa12.19□□□□□ -0.46
SHH-205ENST00000472308 CCDC59Q9P031 241 aaKnown RBP12.19□□□□□ -0.46
SHH-205ENST00000472308 TRAV5A0A0B4J249 113 aa12.18□□□□□ -0.46
SHH-205ENST00000472308 IGHV3-38A0A0C4DH36 116 aa12.18□□□□□ -0.46
SHH-205ENST00000472308 GOSR2O14653 212 aa12.18□□□□□ -0.46
SHH-205ENST00000472308 AGPAT2O15120 278 aa12.18□□□□□ -0.46
SHH-205ENST00000472308 METTL15P1P0C7V9 234 aa12.18□□□□□ -0.46
SHH-205ENST00000472308 CRISP2P16562 243 aa12.18□□□□□ -0.46
SHH-205ENST00000472308 PPP1R1AQ13522 171 aa12.18□□□□□ -0.46
SHH-205ENST00000472308 LINC01556Q5JQF7 62 aa12.18□□□□□ -0.46
SHH-205ENST00000472308 MRPL53Q96EL3 112 aaKnown RBP12.18□□□□□ -0.46
SHH-205ENST00000472308 IGHV1OR15-1A0A075B7D0 117 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 RGS13O14921 159 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 SSSCA1O60232 199 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 SFT2D2O95562 160 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 ORM1P02763 201 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 GUK1Q16774 197 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 ZFAND2AQ8N6M9 145 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 DIRAS2Q96HU8 199 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 MGST2Q99735 147 aa12.17□□□□□ -0.46
SHH-205ENST00000472308 LOC100131303A0A0U1RQF7 123 aa12.16□□□□□ -0.46
SHH-205ENST00000472308 ARL16Q0P5N6 197 aa12.16□□□□□ -0.46
SHH-205ENST00000472308 C10orf113Q5VZT2 155 aa12.16□□□□□ -0.46
SHH-205ENST00000472308 OR10G4Q8NGN3 311 aa12.16□□□□□ -0.46
SHH-205ENST00000472308 SMIM8Q96KF7 97 aa12.16□□□□□ -0.46
SHH-205ENST00000472308 LINC00477Q96M19 166 aa12.16□□□□□ -0.46
SHH-205ENST00000472308 TXNDC17Q9BRA2 123 aa12.16□□□□□ -0.46
SHH-205ENST00000472308 MGAT4CQ9UBM8 478 aa12.16□□□□□ -0.46
SHH-205ENST00000472308 ZNF253O75346 499 aa12.15□□□□□ -0.46
SHH-205ENST00000472308 GPX1P07203 203 aa12.15□□□□□ -0.46
SHH-205ENST00000472308 LINC01620Q4KN68 170 aa12.15□□□□□ -0.46
SHH-205ENST00000472308 OR10P1Q8NGE3 313 aa12.15□□□□□ -0.46
SHH-205ENST00000472308 BLNKQ8WV28 456 aa12.15□□□□□ -0.46
SHH-205ENST00000472308 ARPC5LQ9BPX5 153 aa12.15□□□□□ -0.46
SHH-205ENST00000472308 C9JCJ5 164 aa12.14□□□□□ -0.47
SHH-205ENST00000472308 NDUFB4O95168 129 aa12.14□□□□□ -0.47
SHH-205ENST00000472308 NMBP08949 121 aa12.14□□□□□ -0.47
SHH-205ENST00000472308 TIRAPP58753 221 aa12.14□□□□□ -0.47
SHH-205ENST00000472308 RABL2AQ9UBK7 228 aaPredicted RBP12.14□□□□□ -0.47
SHH-205ENST00000472308 TNXBP22105 4242 aa12.13□□□□□ -0.47
SHH-205ENST00000472308 TRBV19A0A075B6N1 114 aa12.13□□□□□ -0.47
SHH-205ENST00000472308 C9orf47Q6ZRZ4 202 aa12.13□□□□□ -0.47
SHH-205ENST00000472308 RAB2BQ8WUD1 216 aa12.13□□□□□ -0.47
SHH-205ENST00000472308 IGKV2-40A0A087WW87 121 aaPredicted RBP12.12□□□□□ -0.47
SHH-205ENST00000472308 IGKV2D-40P01614 121 aaPredicted RBP12.12□□□□□ -0.47
SHH-205ENST00000472308 SPCS2Q15005 226 aa12.12□□□□□ -0.47
SHH-205ENST00000472308 RASL10AQ92737 203 aa12.12□□□□□ -0.47
SHH-205ENST00000472308 DNAJC4Q9NNZ3 241 aa12.12□□□□□ -0.47
SHH-205ENST00000472308 LECT2O14960 151 aa12.11□□□□□ -0.47
SHH-205ENST00000472308 EXOC3-AS1Q8N2X6 119 aa12.11□□□□□ -0.47
SHH-205ENST00000472308 SOSTQ9BQB4 213 aa12.11□□□□□ -0.47
SHH-205ENST00000472308 CHAC1Q9BUX1 264 aa12.11□□□□□ -0.47
SHH-205ENST00000472308 SLC25A31Q9H0C2 315 aa12.11□□□□□ -0.47
SHH-205ENST00000472308 RSL24D1Q9UHA3 163 aaKnown RBP12.11□□□□□ -0.47
SHH-205ENST00000472308 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.1□□□□□ -0.47
SHH-205ENST00000472308 IGHV3-30P01768 117 aa12.1□□□□□ -0.47
SHH-205ENST00000472308 IGHV3-33P01772 117 aa12.1□□□□□ -0.47
SHH-205ENST00000472308 IGHV3-30-3P0DP02 117 aa12.1□□□□□ -0.47
SHH-205ENST00000472308 IGHV3-30-5P0DP03 117 aa12.1□□□□□ -0.47
SHH-205ENST00000472308 PPT1P50897 306 aa12.1□□□□□ -0.47
SHH-205ENST00000472308 TRIM63Q969Q1 353 aa12.1□□□□□ -0.47
SHH-205ENST00000472308 GGACTQ9BVM4 153 aa12.1□□□□□ -0.47
SHH-205ENST00000472308 ZNF846Q147U1 533 aa12.09□□□□□ -0.47
SHH-205ENST00000472308 MUC21Q5SSG8 566 aa12.09□□□□□ -0.47
SHH-205ENST00000472308 MIC13Q5XKP0 118 aa12.09□□□□□ -0.47
SHH-205ENST00000472308 NHLRC2Q8NBF2 726 aa12.09□□□□□ -0.47
SHH-205ENST00000472308 CIRBP-AS1Q8TBR5 109 aa12.09□□□□□ -0.47
SHH-205ENST00000472308 SRRQ9GZT4 340 aa12.09□□□□□ -0.47
SHH-205ENST00000472308 PRELID1Q9Y255 219 aa12.09□□□□□ -0.47
SHH-205ENST00000472308 TRAV4A0A0B4J268 109 aa12.08□□□□□ -0.48
SHH-205ENST00000472308 TSC22D2O75157 780 aa12.08□□□□□ -0.48
SHH-205ENST00000472308 FAUP35544 74 aaKnown RBP12.08□□□□□ -0.48
SHH-205ENST00000472308 CAMLGP49069 296 aa12.08□□□□□ -0.48
SHH-205ENST00000472308 HNRNPA3P51991 378 aaKnown RBP12.08□□□□□ -0.48
SHH-205ENST00000472308 LAGE3Q14657 143 aa12.08□□□□□ -0.48
SHH-205ENST00000472308 SH2D6Q7Z4S9 175 aa12.08□□□□□ -0.48
SHH-205ENST00000472308 MCFD2Q8NI22 146 aa12.08□□□□□ -0.48
SHH-205ENST00000472308 SLC25A21Q9BQT8 299 aaPredicted RBP12.08□□□□□ -0.48
SHH-205ENST00000472308 ZNF492Q9P255 531 aa12.08□□□□□ -0.48
SHH-205ENST00000472308 MT1HL1P0DM35 61 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 PYYP10082 97 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 TAS2R30P59541 319 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 PDE6HQ13956 83 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 TMEM78Q5T7P6 136 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 Q6ZRG5 221 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 NRARPQ7Z6K4 114 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 Q8N3U1 123 aa12.07□□□□□ -0.48
SHH-205ENST00000472308 Q8TAT8 98 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms