RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 MUC2Q02817 5179 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 A0A087X0K7 114 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 IGHV3-38A0A0C4DH36 116 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 GABARAPH6UMI1 98 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 ATG12O94817 140 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 GABARAPO95166 117 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 SULT1A3P0DMM9 295 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 SULT1A4P0DMN0 295 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 SRIP30626 198 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 TCL1AP56279 114 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 BTN1A1Q13410 526 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 SAMD13Q5VXD3 122 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 C9orf47Q6ZRZ4 202 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 LYZL2Q7Z4W2 148 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 ZNF486Q96H40 463 aaPredicted RBP3.4□□□□□ -1.87
PTPN4-209ENST00000469511 CNBD2Q96M20 576 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 PYGO2Q9BRQ0 406 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 TMEM147Q9BVK8 224 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 NAA60Q9H7X0 242 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 ZNF331Q9NQX6 463 aaPredicted RBP3.4□□□□□ -1.87
PTPN4-209ENST00000469511 PAIP2BQ9ULR5 123 aaKnown RBP3.4□□□□□ -1.87
PTPN4-209ENST00000469511 TMEM56-RWDD3S4R434 201 aa3.4□□□□□ -1.87
PTPN4-209ENST00000469511 TRGV4A0A0C4DH28 118 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 RBFOX3A6NFN3 312 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 ANKRD65E5RJM6 399 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 H3BQ15 152 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 K7EP13 123 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 SCGB2B2Q4G0G5 96 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 LINC01556Q5JQF7 62 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 GGNBP1Q5YKI7 109 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 PQLC2Q6ZP29 291 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 C10orf126Q8N4M7 172 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 EIF4E3Q8N5X7 224 aaKnown RBP3.39□□□□□ -1.87
PTPN4-209ENST00000469511 BPIFCQ8NFQ6 507 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 OR52I2Q8NH67 350 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 LRRC20Q8TCA0 184 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 LINC00477Q96M19 166 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 GPR82Q96P67 336 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 VGLL1Q99990 258 aa3.39□□□□□ -1.87
PTPN4-209ENST00000469511 TRAV5A0A0B4J249 113 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 IGHV3-16A0A0C4DH30 117 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 C7orf71A4D174 169 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 RNF222A6NCQ9 220 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 CRYM-AS1A6NIL9 109 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 H3BP45 60 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 M0R3E3 92 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 HPGDSO60760 199 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 OR5G3P0C626 314 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 RPL7P18124 248 aaKnown RBP3.38□□□□□ -1.87
PTPN4-209ENST00000469511 RNASE4P34096 147 aaKnown RBP3.38□□□□□ -1.87
PTPN4-209ENST00000469511 LSM3P62310 102 aaKnown RBP3.38□□□□□ -1.87
PTPN4-209ENST00000469511 SMCO1Q147U7 214 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 RNASE10Q5GAN6 216 aaKnown RBP3.38□□□□□ -1.87
PTPN4-209ENST00000469511 CYP2G1PQ6ZSU1 146 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 ACOT7LQ6ZUV0 252 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 DAZ4Q86SG3 579 aaKnown RBP3.38□□□□□ -1.87
PTPN4-209ENST00000469511 CCDC71LQ8N9Z2 235 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 OR10P1Q8NGE3 313 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 TERB2Q8NHR7 220 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 ZFAND1Q8TCF1 268 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 SAT2Q96F10 170 aaPredicted RBP3.38□□□□□ -1.87
PTPN4-209ENST00000469511 FAM19A4Q96LR4 140 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 AGPAT4-IT1Q9H0P7 198 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 RBM38Q9H0Z9 239 aaKnown RBP3.38□□□□□ -1.87
PTPN4-209ENST00000469511 DAZ3Q9NR90 486 aaKnown RBP3.38□□□□□ -1.87
PTPN4-209ENST00000469511 COMMD3Q9UBI1 195 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 GPR132Q9UNW8 380 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 HIGD1AQ9Y241 93 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 PAM16Q9Y3D7 125 aa3.38□□□□□ -1.87
PTPN4-209ENST00000469511 KLLNB2CW77 178 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 WRBO00258 174 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 VCYO14598 125 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 PITX3O75364 302 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 HYPMO75409 117 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 IL5P05113 134 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 FABP1P07148 127 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 LINC00869P0C866 280 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 ANXA7P20073 488 aaKnown RBP3.37□□□□□ -1.87
PTPN4-209ENST00000469511 AMTP48728 403 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 CAMPP49913 170 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 CCR6P51684 374 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 ZNF846Q147U1 533 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 OR10J3Q5JRS4 329 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 STEAP1BQ6NZ63 245 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 Q6ZRU5 148 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 IQCF2Q8IXL9 164 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 ZFAND2AQ8N6M9 145 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 PRR26Q8N8Z3 221 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 NEXN-AS1Q8NBZ9 246 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 ZNF680Q8NEM1 530 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 OR1S1Q8NH92 325 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 KRTAP4-2Q9BYR5 136 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 ARL6Q9H0F7 186 aa3.37□□□□□ -1.87
PTPN4-209ENST00000469511 IGHV1OR15-1A0A075B7D0 117 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 MPDU1O75352 247 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 TNFAIP8O95379 198 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 RAB3DO95716 219 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 CFDP00746 253 aaPredicted RBP3.36□□□□□ -1.87
PTPN4-209ENST00000469511 SLC25A5P05141 298 aaKnown RBP3.36□□□□□ -1.87
PTPN4-209ENST00000469511 LEPP41159 167 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms