RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 GCHFRP30047 84 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 RANP62826 216 aaKnown RBP8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 AMTNQ6UX39 209 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 OR10J6PQ8NGY7 276 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 OR11H2Q8NH07 326 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 TMED6Q8WW62 240 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 SLC35B3Q9H1N7 401 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 Q9H3A6 140 aa8.61□□□□□ -1.03
SQSTM1-206ENST00000466342 FXYD7P58549 80 aa8.6□□□□□ -1.03
SQSTM1-206ENST00000466342 EIF5AL1Q6IS14 154 aaKnown RBP8.6□□□□□ -1.03
SQSTM1-206ENST00000466342 SLC51BQ86UW2 128 aa8.6□□□□□ -1.03
SQSTM1-206ENST00000466342 CSNK1G2-AS1Q8NCQ2 148 aa8.6□□□□□ -1.03
SQSTM1-206ENST00000466342 SUN5Q8TC36 379 aa8.6□□□□□ -1.03
SQSTM1-206ENST00000466342 C11orf68Q9H3H3 251 aaKnown RBP8.6□□□□□ -1.03
SQSTM1-206ENST00000466342 TMEM167BQ9NRX6 74 aa8.6□□□□□ -1.03
SQSTM1-206ENST00000466342 XCL2Q9UBD3 114 aa8.6□□□□□ -1.03
SQSTM1-206ENST00000466342 MAP1LC3B2A6NCE7 125 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 NPIPB6E9PJ23 425 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 BOLA2-SMG1P6H3BVE0 249 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 AMBPP02760 352 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 FHITP49789 147 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 SPINK13Q1W4C9 94 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 DPPA3Q6W0C5 159 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 MAP1LC3BQ9GZQ8 125 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 OTORQ9NRC9 128 aa8.59□□□□□ -1.03
SQSTM1-206ENST00000466342 PGPA6NDG6 321 aa8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 CSN1S1P47710 185 aa8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 NKX2-5P52952 324 aaPredicted RBP8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 FAM74A1Q5RGS3 127 aa8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 IQCF2Q8IXL9 164 aa8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 C11orf45Q8TAV5 145 aa8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 C2CD4CQ8TF44 421 aa8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 ODF3Q96PU9 254 aa8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 PPP1R14DQ9NXH3 145 aa8.58□□□□□ -1.04
SQSTM1-206ENST00000466342 IGKV2-40A0A087WW87 121 aaPredicted RBP8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 ZNF705EA8MWA4 302 aaPredicted RBP8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 M0R2Z0 102 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 RTL8CO15255 209 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 IGKV2D-40P01614 121 aaPredicted RBP8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 FGF8P55075 233 aaPredicted RBP8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 C9orf47Q6ZRZ4 202 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 ARL6IP6Q8N6S5 226 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 MAPKAPK5-AS1Q8N8E1 139 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 FAM213BQ8TBF2 198 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 RXFP4Q8TDU9 374 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 IGF2BP2-AS1Q96M15 143 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 APLNQ9ULZ1 77 aa8.57□□□□□ -1.04
SQSTM1-206ENST00000466342 A0A1W2PRE2 83 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 RBAKDNA6NC62 111 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 DIRC3C9JPN6 131 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 CRXO43186 299 aaPredicted RBP8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 CT45A10P0DMU9 189 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 MIFP14174 115 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 TSPOP30536 169 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 CDKN1BP46527 198 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 RAB5CP51148 216 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 ERCC8Q13216 396 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 ZNF705AQ6ZN79 300 aaPredicted RBP8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 ZNF575Q86XF7 245 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 CMTM2Q8TAZ6 248 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 MBD3L1Q8WWY6 194 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 LINC00477Q96M19 166 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 AGPAT4-IT1Q9H0P7 198 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 TMPRSS5Q9H3S3 457 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 X6R8D5 127 aa8.56□□□□□ -1.04
SQSTM1-206ENST00000466342 TRAV12-2A0A075B6T6 113 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 INSP01308 110 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 SLC25A5P05141 298 aaKnown RBP8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 LEPP41159 167 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 SULT1A2P50226 295 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 TMEM78Q5T7P6 136 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 C1orf158Q8N1D5 194 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 Q8NAQ8 132 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 C5orf17Q8NAS9 161 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 VGLL1Q99990 258 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 RPH3ALQ9UNE2 315 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 GOLT1BQ9Y3E0 138 aa8.55□□□□□ -1.04
SQSTM1-206ENST00000466342 GGTLC3B5MD39 225 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 DEFB4AO15263 64 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 CDK2AP2O75956 126 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 H2AFB1P0C5Y9 115 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 NANOS2P60321 138 aaKnown RBP8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 SUMO1P63165 101 aaKnown RBP8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 GNG5P63218 68 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 SFT2D1Q8WV19 159 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 FAM19A4Q96LR4 140 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 NEU1Q99519 415 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 ZNF492Q9P255 531 aa8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 YTHDF2Q9Y5A9 579 aaKnown RBP8.54□□□□□ -1.04
SQSTM1-206ENST00000466342 IGHV3OR16-12A0A075B7B8 117 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 IGHV4-28A0A0C4DH34 117 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 SERTM2A0A1B0GWG4 89 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 FAM74A7A6NL05 159 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 TCRAP04437 139 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 RBMY1A1P0DJD3 496 aaKnown RBP8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 RBMY1CP0DJD4 496 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 ZNF138P52744 262 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 UBE2G2P60604 165 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 KIR3DS1Q14943 382 aa8.53□□□□□ -1.04
SQSTM1-206ENST00000466342 RBMY1FQ15415 496 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms