RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 TP73-AS1Q9UF72 201 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 SLC45A2Q9UMX9 530 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 DSTQ03001 7570 aaKnown RBP1.37□□□□□ -2.19
USP40-211ENST00000464956 A0A0A6YYD4 124 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 LOC107984640A0A0U1RRK4 108 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 GABARAPH6UMI1 98 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 GABARAPO95166 117 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 CFDP00746 253 aaPredicted RBP1.36□□□□□ -2.19
USP40-211ENST00000464956 OR4E1P0C645 316 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 LINC00694P0DN24 101 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 CXCL2P19875 107 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 F2RP25116 425 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 LPAR6P43657 344 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 RAB5CP51148 216 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 RPP30P78346 268 aaKnown RBP1.36□□□□□ -2.19
USP40-211ENST00000464956 REG3AQ06141 175 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 KLF9Q13886 244 aaPredicted RBP1.36□□□□□ -2.19
USP40-211ENST00000464956 FAM229BQ4G0N7 80 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 HSD17B12Q53GQ0 312 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 Q6ZS49 121 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 LINC00269Q8N2A0 174 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 C15orf56Q8N910 161 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 OR56B1Q8NGI3 324 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 OR2G3Q8NGZ4 309 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 ZFAND1Q8TCF1 268 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 FCAMRQ8WWV6 532 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 BORCS5Q969J3 196 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 SLC29A1Q99808 456 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 HOPXQ9BPY8 73 aaPredicted RBP1.36□□□□□ -2.19
USP40-211ENST00000464956 TMEM109Q9BVC6 243 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 TMEM147Q9BVK8 224 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 SRRQ9GZT4 340 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 SLC5A7Q9GZV3 580 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 LPAR5Q9H1C0 372 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 ANAPC11Q9NYG5 84 aa1.36□□□□□ -2.19
USP40-211ENST00000464956 A0A087X0K7 114 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 GVQW2A0A096LPI5 108 aaPredicted RBP1.35□□□□□ -2.19
USP40-211ENST00000464956 A0A0G2JRQ6 117 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 SLC17A3O00476 420 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 RGS16O15492 202 aaPredicted RBP1.35□□□□□ -2.19
USP40-211ENST00000464956 NMBP08949 121 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 GADD45AP24522 165 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 RPL28P46779 137 aaKnown RBP1.35□□□□□ -2.19
USP40-211ENST00000464956 TMEM50BP56557 158 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 PIGPP57054 158 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 UBE2MP61081 183 aaKnown RBP1.35□□□□□ -2.19
USP40-211ENST00000464956 CCDC58Q4VC31 144 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 PLAC9Q5JTB6 97 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 CFAP126Q5VTH2 177 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 GGNBP1Q5YKI7 109 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 RPL22L1Q6P5R6 122 aaKnown RBP1.35□□□□□ -2.19
USP40-211ENST00000464956 CNIH2Q6PI25 160 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 FAM159AQ6UWV7 190 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 LCN15Q6UWW0 184 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 OR10G7Q8NGN6 311 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 DNAJC9Q8WXX5 260 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 UFD1Q92890 307 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 MRPL53Q96EL3 112 aaKnown RBP1.35□□□□□ -2.19
USP40-211ENST00000464956 CHCHD5Q9BSY4 110 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 ZNF331Q9NQX6 463 aaPredicted RBP1.35□□□□□ -2.19
USP40-211ENST00000464956 PLCXD1Q9NUJ7 323 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 RRP15Q9Y3B9 282 aaKnown RBP1.35□□□□□ -2.19
USP40-211ENST00000464956 PHLDA3Q9Y5J5 127 aa1.35□□□□□ -2.19
USP40-211ENST00000464956 IGKV1D-8A0A087WSZ0 117 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 TRBV6-8A0A0A6YYG3 113 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 C20orf202A1L168 122 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 FAM24AA6NFZ4 105 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 RHODO00212 210 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 GPR31O00270 319 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 GNGT2O14610 69 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 CTDSPLO15194 276 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 PPYP01298 95 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 RLN1P04808 185 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 COX4I1P13073 169 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 CRISP2P16562 243 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 DTYMKP23919 212 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 CASQ1P31415 396 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 GTF2A1P52655 376 aaPredicted RBP1.34□□□□□ -2.19
USP40-211ENST00000464956 FXYD4P59646 89 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 RPS20P60866 119 aaKnown RBP1.34□□□□□ -2.19
USP40-211ENST00000464956 SYCNQ0VAF6 134 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 RNF151Q2KHN1 245 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 BSXQ3C1V8 233 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 C2orf83Q53S99 150 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 HSP90B2PQ58FF3 399 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 LINC00242Q5T6M2 205 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 LCE1DQ5T752 114 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 GPR107Q5VW38 600 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 TMEM268Q5VZI3 342 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 C12orf73Q69YU5 71 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 LAIR2Q6ISS4 152 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 ZNF818PQ6ZRF7 136 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 S100A7AQ86SG5 101 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 TBC1D26Q86UD7 250 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 DTD1Q8TEA8 209 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 ISOC2Q96AB3 205 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 YIPF6Q96EC8 236 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 DIABLOQ9NR28 239 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 UQCC1Q9NVA1 299 aa1.34□□□□□ -2.19
USP40-211ENST00000464956 NKIRAS1Q9NYS0 192 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms