RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 CXCL16Q9H2A7 254 aa2.36□□□□□ -2.03
PTCD3-205ENST00000464541 PCNX2A6NKB5 2137 aa2.36□□□□□ -2.03
PTCD3-205ENST00000464541 KDM5BQ9UGL1 1544 aa2.36□□□□□ -2.03
PTCD3-205ENST00000464541 NISCHQ9Y2I1 1504 aa2.36□□□□□ -2.03
PTCD3-205ENST00000464541 SYNJ1O43426 1573 aa2.36□□□□□ -2.03
PTCD3-205ENST00000464541 NUP210LQ5VU65 1888 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 TRPM3Q9HCF6 1732 aaPredicted RBP2.35□□□□□ -2.03
PTCD3-205ENST00000464541 IGLV10-54A0A075B6I4 117 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 TRAV30A0A087WSZ9 112 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 LOC100130705A0A1B0GUX0 176 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 A0A1B0GVG6 124 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 ZNF705FA8MVS1 300 aaPredicted RBP2.35□□□□□ -2.03
PTCD3-205ENST00000464541 HYPMO75409 117 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 TNFP01375 233 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 CLPSP04118 112 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 CCL4P13236 92 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 CDK6Q00534 326 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 SS18Q15532 418 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 TMEM254Q8TBM7 123 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 CST11Q9H112 138 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 FKBP11Q9NYL4 201 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 IER3IP1Q9Y5U9 82 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 EML6Q6ZMW3 1958 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 TRPM1Q7Z4N2 1603 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 CDK5RAP2Q96SN8 1893 aa2.35□□□□□ -2.03
PTCD3-205ENST00000464541 ARHGEF28Q8N1W1 1705 aaKnown RBP2.34□□□□□ -2.03
PTCD3-205ENST00000464541 FANCMQ8IYD8 2048 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 TRAV3A0A0B4J244 114 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 FNDC10F2Z333 226 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 UBL3O95164 117 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 CD3DP04234 171 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 CD2P06729 351 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 OR4X2Q8NGF9 303 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 MUCL1Q96DR8 90 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 Q96M85 177 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 SLC50A1Q9BRV3 221 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 TAS2R8Q9NYW2 309 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 RPL26L1Q9UNX3 145 aaKnown RBP2.34□□□□□ -2.03
PTCD3-205ENST00000464541 ANKRD31Q8N7Z5 1873 aa2.34□□□□□ -2.03
PTCD3-205ENST00000464541 MYH7BA7E2Y1 1941 aa2.34□□□□□ -2.04
PTCD3-205ENST00000464541 RGS12O14924 1447 aa2.34□□□□□ -2.04
PTCD3-205ENST00000464541 SCAF11Q99590 1463 aaKnown RBP2.33□□□□□ -2.04
PTCD3-205ENST00000464541 IGKV1D-42A0A075B6H8 117 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 IGHV1-24A0A0C4DH33 117 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 M0R2P5 195 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 ZNF737O75373 536 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 CRPP02741 224 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 SHBGP04278 402 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 Q56UQ5 140 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 Q8IYB0 196 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 OTOSQ8NHW6 89 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 NABP2Q9BQ15 211 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 SMIM7Q9BQ49 75 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 MRPL57Q9BQC6 102 aaKnown RBP2.33□□□□□ -2.04
PTCD3-205ENST00000464541 RPRMQ9NS64 109 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 LSM2Q9Y333 95 aaKnown RBP2.33□□□□□ -2.04
PTCD3-205ENST00000464541 KTN1Q86UP2 1357 aaKnown RBP2.33□□□□□ -2.04
PTCD3-205ENST00000464541 NUP98P52948 1817 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 COL1A1P02452 1464 aaPredicted RBP2.33□□□□□ -2.04
PTCD3-205ENST00000464541 MBD5Q9P267 1494 aa2.33□□□□□ -2.04
PTCD3-205ENST00000464541 TMSB15BA0A087X1C1 80 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 ODF3BA8MYP8 253 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 APOC4-APOC2K7ER74 178 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 M0R129 80 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 APOC2P02655 101 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 CD14P08571 375 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 MIFP14174 115 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 ROMO1P60602 79 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 ZNF846Q147U1 533 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 MRPL54Q6P161 138 aaKnown RBP2.32□□□□□ -2.04
PTCD3-205ENST00000464541 C2orf82Q6UX34 121 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 Q6ZUT4 128 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 SVBPQ8N300 66 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 Q8N814 137 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 ZNF431Q8TF32 576 aaPredicted RBP2.32□□□□□ -2.04
PTCD3-205ENST00000464541 Q9BRP9 147 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 AGPAT4-IT1Q9H0P7 198 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 MYO16Q9Y6X6 1858 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 ERBINQ96RT1 1412 aa2.32□□□□□ -2.04
PTCD3-205ENST00000464541 N4BP2Q86UW6 1770 aaPredicted RBP2.31□□□□□ -2.04
PTCD3-205ENST00000464541 NYNRINQ9P2P1 1898 aaKnown RBP2.31□□□□□ -2.04
PTCD3-205ENST00000464541 TRAV1-1A0A0B4J248 108 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 E7EUB6 86 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 KLF7O75840 302 aaPredicted RBP2.31□□□□□ -2.04
PTCD3-205ENST00000464541 ASAH2BP0C7U1 165 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 DSCR4P56555 118 aaPredicted RBP2.31□□□□□ -2.04
PTCD3-205ENST00000464541 HSD52Q0P140 79 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 ATP11AUNQ6ZP68 121 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 ARPINQ7Z6K5 226 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 PLPP5Q8NEB5 264 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 ATP6V0E2Q8NHE4 81 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 SEC11CQ9BY50 192 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 MYOM2P54296 1465 aa2.31□□□□□ -2.04
PTCD3-205ENST00000464541 SCN8AQ9UQD0 1980 aa2.3□□□□□ -2.04
PTCD3-205ENST00000464541 IGKV2D-26A0A0A0MRZ7 120 aa2.3□□□□□ -2.04
PTCD3-205ENST00000464541 PIGBOS1A0A0B4J2F0 54 aa2.3□□□□□ -2.04
PTCD3-205ENST00000464541 MUC21A0A0G2JKD1 596 aa2.3□□□□□ -2.04
PTCD3-205ENST00000464541 MUC21A0A140T8X8 626 aa2.3□□□□□ -2.04
PTCD3-205ENST00000464541 C3orf85A0A1B0GTC6 90 aa2.3□□□□□ -2.04
PTCD3-205ENST00000464541 SPAARA0A1B0GVQ0 90 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms