RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 C9orf47Q6ZRZ4 202 aa16.51■□□□□ 0.23
CCDC28B-203ENST00000461819 STOML3Q8TAV4 291 aa16.51■□□□□ 0.23
CCDC28B-203ENST00000461819 AGPAT4-IT1Q9H0P7 198 aa16.51■□□□□ 0.23
CCDC28B-203ENST00000461819 MAP1LC3B2A6NCE7 125 aa16.5■□□□□ 0.23
CCDC28B-203ENST00000461819 HBE1P02100 147 aa16.5■□□□□ 0.23
CCDC28B-203ENST00000461819 FGF8P55075 233 aaPredicted RBP16.5■□□□□ 0.23
CCDC28B-203ENST00000461819 SUN5Q8TC36 379 aa16.5■□□□□ 0.23
CCDC28B-203ENST00000461819 TMED6Q8WW62 240 aa16.5■□□□□ 0.23
CCDC28B-203ENST00000461819 VGLL1Q99990 258 aa16.5■□□□□ 0.23
CCDC28B-203ENST00000461819 MAP1LC3BQ9GZQ8 125 aa16.5■□□□□ 0.23
CCDC28B-203ENST00000461819 DIRC3C9JPN6 131 aa16.49■□□□□ 0.23
CCDC28B-203ENST00000461819 TMEM256Q8N2U0 113 aa16.49■□□□□ 0.23
CCDC28B-203ENST00000461819 FAM213BQ8TBF2 198 aa16.49■□□□□ 0.23
CCDC28B-203ENST00000461819 RBAKDNA6NC62 111 aa16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 SLC25A5P05141 298 aaKnown RBP16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 FHITP49789 147 aa16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 PMS2P11Q13670 270 aa16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 KIR3DS1Q14943 382 aa16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 RRN3P1Q2M238 152 aa16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 GFI1BQ5VTD9 330 aa16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 C11orf45Q8TAV5 145 aa16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 LINC01587Q99440 93 aa16.48■□□□□ 0.23
CCDC28B-203ENST00000461819 CXorf65A6NEN9 183 aa16.47■□□□□ 0.23
CCDC28B-203ENST00000461819 CASC10Q5T4H9 136 aa16.47■□□□□ 0.23
CCDC28B-203ENST00000461819 EIF5AL1Q6IS14 154 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-203ENST00000461819 C9orf62Q8N4C0 152 aa16.47■□□□□ 0.23
CCDC28B-203ENST00000461819 TMPRSS5Q9H3S3 457 aa16.47■□□□□ 0.23
CCDC28B-203ENST00000461819 PLA2G2EQ9NZK7 142 aa16.47■□□□□ 0.23
CCDC28B-203ENST00000461819 LOC102723971A0A1B0GUV8 181 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 TMEM189A5PLL7 270 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 ZNF138P52744 262 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 EMP1P54849 157 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 DPPA3Q6W0C5 159 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 GOLT1AQ6ZVE7 132 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 SLC51BQ86UW2 128 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 Q8TAT8 98 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 C20orf144Q9BQM9 153 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 ZNF492Q9P255 531 aa16.46■□□□□ 0.23
CCDC28B-203ENST00000461819 ZNF705GA8MUZ8 300 aaPredicted RBP16.45■□□□□ 0.22
CCDC28B-203ENST00000461819 UBE2G2P60604 165 aa16.45■□□□□ 0.22
CCDC28B-203ENST00000461819 GNG5P63218 68 aa16.45■□□□□ 0.22
CCDC28B-203ENST00000461819 ARL6IP6Q8N6S5 226 aa16.45■□□□□ 0.22
CCDC28B-203ENST00000461819 C5orf17Q8NAS9 161 aa16.45■□□□□ 0.22
CCDC28B-203ENST00000461819 FAM19A4Q96LR4 140 aa16.45■□□□□ 0.22
CCDC28B-203ENST00000461819 TRAV12-3A0A0B4J271 114 aa16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 A0A1W2PRE2 83 aa16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 GGTLC3B5MD39 225 aa16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 GPX1P07203 203 aa16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 HTN1P15515 57 aa16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 NANOS2P60321 138 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 SUMO1P63165 101 aaKnown RBP16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 NIPSNAP3BQ9BS92 247 aa16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 CSMD3Q7Z407 3707 aa16.44■□□□□ 0.22
CCDC28B-203ENST00000461819 C7orf71A4D174 169 aa16.43■□□□□ 0.22
CCDC28B-203ENST00000461819 H7BYZ3 331 aa16.43■□□□□ 0.22
CCDC28B-203ENST00000461819 CRISP2P16562 243 aa16.43■□□□□ 0.22
CCDC28B-203ENST00000461819 TAS2R60P59551 318 aa16.43■□□□□ 0.22
CCDC28B-203ENST00000461819 SFT2D1Q8WV19 159 aa16.43■□□□□ 0.22
CCDC28B-203ENST00000461819 STARD9Q9P2P6 4700 aa16.43■□□□□ 0.22
CCDC28B-203ENST00000461819 A0A1B0GV50 99 aa16.42■□□□□ 0.22
CCDC28B-203ENST00000461819 KLLNB2CW77 178 aa16.42■□□□□ 0.22
CCDC28B-203ENST00000461819 K7EQM0 130 aa16.42■□□□□ 0.22
CCDC28B-203ENST00000461819 NMBP08949 121 aa16.42■□□□□ 0.22
CCDC28B-203ENST00000461819 RNASE4P34096 147 aaKnown RBP16.42■□□□□ 0.22
CCDC28B-203ENST00000461819 BTN1A1Q13410 526 aa16.42■□□□□ 0.22
CCDC28B-203ENST00000461819 CELA1Q9UNI1 258 aa16.42■□□□□ 0.22
CCDC28B-203ENST00000461819 YTHDF2Q9Y5A9 579 aaKnown RBP16.42■□□□□ 0.22
CCDC28B-203ENST00000461819 TRBV7-9A0A0J9YWB2 115 aa16.41■□□□□ 0.22
CCDC28B-203ENST00000461819 SERTM2A0A1B0GWG4 89 aa16.41■□□□□ 0.22
CCDC28B-203ENST00000461819 IFNA7P01567 189 aa16.41■□□□□ 0.22
CCDC28B-203ENST00000461819 TCRAP04437 139 aa16.41■□□□□ 0.22
CCDC28B-203ENST00000461819 PRM2P04554 102 aa16.41■□□□□ 0.22
CCDC28B-203ENST00000461819 MBD3L1Q8WWY6 194 aa16.41■□□□□ 0.22
CCDC28B-203ENST00000461819 H2AFB1P0C5Y9 115 aa16.4■□□□□ 0.22
CCDC28B-203ENST00000461819 RAB5CP51148 216 aa16.4■□□□□ 0.22
CCDC28B-203ENST00000461819 NKX2-5P52952 324 aaPredicted RBP16.4■□□□□ 0.22
CCDC28B-203ENST00000461819 ZFAND2AQ8N6M9 145 aa16.4■□□□□ 0.22
CCDC28B-203ENST00000461819 EPDR1Q9UM22 224 aa16.4■□□□□ 0.22
CCDC28B-203ENST00000461819 TRAV8-1A0A0A6YYK1 113 aa16.39■□□□□ 0.21
CCDC28B-203ENST00000461819 NUPR2A6NF83 97 aa16.39■□□□□ 0.21
CCDC28B-203ENST00000461819 FAM74A7A6NL05 159 aa16.39■□□□□ 0.21
CCDC28B-203ENST00000461819 SPART-AS1P0CW21 52 aa16.39■□□□□ 0.21
CCDC28B-203ENST00000461819 C16orf74Q96GX8 76 aa16.39■□□□□ 0.21
CCDC28B-203ENST00000461819 NKX6-2Q9C056 277 aaPredicted RBP16.39■□□□□ 0.21
CCDC28B-203ENST00000461819 LENEPQ9Y5L5 61 aa16.39■□□□□ 0.21
CCDC28B-203ENST00000461819 TEX48A0A1B0GUV7 120 aa16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 AZU1P20160 251 aa16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 PRR9Q5T870 116 aa16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 FAM222AQ5U5X8 452 aa16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 CCDC28AQ8IWP9 274 aa16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 CYB561D1Q8N8Q1 229 aa16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 PHLDA1Q8WV24 401 aaPredicted RBP16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 PYGO2Q9BRQ0 406 aa16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 ATG101Q9BSB4 218 aa16.38■□□□□ 0.21
CCDC28B-203ENST00000461819 SULT1A2P50226 295 aa16.37■□□□□ 0.21
CCDC28B-203ENST00000461819 CST9LP1Q5W188 147 aa16.37■□□□□ 0.21
CCDC28B-203ENST00000461819 SGK494Q96LW2 274 aa16.37■□□□□ 0.21
CCDC28B-203ENST00000461819 NDFIP1Q9BT67 221 aa16.37■□□□□ 0.21
CCDC28B-203ENST00000461819 DKK2Q9UBU2 259 aa16.37■□□□□ 0.21
CCDC28B-203ENST00000461819 ZNF767PQ75MW2 155 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms