RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 HECTD4Q9Y4D8 3996 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 RNF222A6NCQ9 220 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 KLLNB2CW77 178 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 G3V3Q6 166 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 SLC25A5P05141 298 aaKnown RBP13.13□□□□□ -0.31
HOXD3-204ENST00000459979 CRISP2P16562 243 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 SERF2P84101 59 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 ERCC8Q13216 396 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 FAM122CQ6P4D5 195 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 RNASE8Q8TDE3 154 aaKnown RBP13.13□□□□□ -0.31
HOXD3-204ENST00000459979 TMEM263Q8WUH6 116 aaKnown RBP13.13□□□□□ -0.31
HOXD3-204ENST00000459979 PLA2G2EQ9NZK7 142 aa13.13□□□□□ -0.31
HOXD3-204ENST00000459979 TRBV7-9A0A0J9YWB2 115 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 A0A1W2PPV4 95 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 ATP6V0CP27449 155 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 RAB2AP61019 212 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 DAD1P61803 113 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 RANP62826 216 aaKnown RBP13.12□□□□□ -0.31
HOXD3-204ENST00000459979 HSD17B11Q8NBQ5 300 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 OR10G4Q8NGN3 311 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 OR10G9Q8NGN4 311 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 OR10G7Q8NGN6 311 aa13.12□□□□□ -0.31
HOXD3-204ENST00000459979 RBAKDNA6NC62 111 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 MBP02144 154 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 TMEM78Q5T7P6 136 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 ARL6IP6Q8N6S5 226 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 VGLL1Q99990 258 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 PYGO2Q9BRQ0 406 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 NDUFAF3Q9BU61 184 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 Q9H3A6 140 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 ZNF492Q9P255 531 aa13.11□□□□□ -0.31
HOXD3-204ENST00000459979 IGKV2-40A0A087WW87 121 aaPredicted RBP13.1□□□□□ -0.31
HOXD3-204ENST00000459979 FXYD6-FXYD2A0A087WZ82 144 aa13.1□□□□□ -0.31
HOXD3-204ENST00000459979 TRAV12-3A0A0B4J271 114 aa13.1□□□□□ -0.31
HOXD3-204ENST00000459979 IGKV2D-40P01614 121 aaPredicted RBP13.1□□□□□ -0.31
HOXD3-204ENST00000459979 CSN1S1P47710 185 aa13.1□□□□□ -0.31
HOXD3-204ENST00000459979 RXFP4Q8TDU9 374 aa13.1□□□□□ -0.31
HOXD3-204ENST00000459979 LINC00467Q9BRT7 94 aa13.1□□□□□ -0.31
HOXD3-204ENST00000459979 TIMM8BQ9Y5J9 83 aaPredicted RBP13.1□□□□□ -0.31
HOXD3-204ENST00000459979 KIAA1109Q2LD37 5005 aa13.09□□□□□ -0.31
HOXD3-204ENST00000459979 C7orf71A4D174 169 aa13.09□□□□□ -0.31
HOXD3-204ENST00000459979 ZNF324O75467 553 aaPredicted RBP13.09□□□□□ -0.31
HOXD3-204ENST00000459979 STAG3L2P0CL84 134 aa13.09□□□□□ -0.31
HOXD3-204ENST00000459979 STAG3L3P0CL85 134 aa13.09□□□□□ -0.31
HOXD3-204ENST00000459979 HTN1P15515 57 aa13.09□□□□□ -0.31
HOXD3-204ENST00000459979 CCDC28AQ8IWP9 274 aa13.09□□□□□ -0.31
HOXD3-204ENST00000459979 ZFAND2AQ8N6M9 145 aa13.09□□□□□ -0.31
HOXD3-204ENST00000459979 GNPNAT1Q96EK6 184 aaPredicted RBP13.09□□□□□ -0.31
HOXD3-204ENST00000459979 OTORQ9NRC9 128 aa13.09□□□□□ -0.31
HOXD3-204ENST00000459979 BORCS7-ASMTA0A0B4J1R7 106 aa13.08□□□□□ -0.32
HOXD3-204ENST00000459979 EIF3GO75821 320 aaKnown RBP eCLIP13.08□□□□□ -0.32
HOXD3-204ENST00000459979 CDC34P49427 236 aaPredicted RBP13.08□□□□□ -0.32
HOXD3-204ENST00000459979 ZNF138P52744 262 aa13.08□□□□□ -0.32
HOXD3-204ENST00000459979 RPL7L1Q6DKI1 246 aaKnown RBP13.08□□□□□ -0.32
HOXD3-204ENST00000459979 SUN5Q8TC36 379 aa13.08□□□□□ -0.32
HOXD3-204ENST00000459979 PCLOQ9Y6V0 5065 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 CBY3A6NI87 242 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 DIRC3C9JPN6 131 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 J3KRW8 73 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 GPX1P07203 203 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 CD300CQ08708 224 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 LINC00612Q8N6U2 182 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 TMED6Q8WW62 240 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 RAB24Q969Q5 203 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 LENEPQ9Y5L5 61 aa13.07□□□□□ -0.32
HOXD3-204ENST00000459979 TAAR5O14804 337 aa13.06□□□□□ -0.32
HOXD3-204ENST00000459979 DEFB130BP0DP73 79 aa13.06□□□□□ -0.32
HOXD3-204ENST00000459979 DEFB130AP0DP74 79 aa13.06□□□□□ -0.32
HOXD3-204ENST00000459979 BTN1A1Q13410 526 aa13.06□□□□□ -0.32
HOXD3-204ENST00000459979 ANXA2RQ3ZCQ2 193 aa13.06□□□□□ -0.32
HOXD3-204ENST00000459979 FAM74A1Q5RGS3 127 aa13.06□□□□□ -0.32
HOXD3-204ENST00000459979 SH3BGRL3Q9H299 93 aa13.06□□□□□ -0.32
HOXD3-204ENST00000459979 NOP10Q9NPE3 64 aaKnown RBP13.06□□□□□ -0.32
HOXD3-204ENST00000459979 PGPA6NDG6 321 aa13.05□□□□□ -0.32
HOXD3-204ENST00000459979 ARL14EPLP0DKL9 152 aa13.05□□□□□ -0.32
HOXD3-204ENST00000459979 RNASE4P34096 147 aaKnown RBP13.05□□□□□ -0.32
HOXD3-204ENST00000459979 DAZ2Q13117 558 aaKnown RBP13.05□□□□□ -0.32
HOXD3-204ENST00000459979 HMGB3O15347 200 aaKnown RBP13.04□□□□□ -0.32
HOXD3-204ENST00000459979 ARPC5O15511 151 aa13.04□□□□□ -0.32
HOXD3-204ENST00000459979 P0DMU3 169 aa13.04□□□□□ -0.32
HOXD3-204ENST00000459979 FAM231AP0DMU4 169 aa13.04□□□□□ -0.32
HOXD3-204ENST00000459979 FAM231CP0DMU5 169 aa13.04□□□□□ -0.32
HOXD3-204ENST00000459979 HTN3P15516 51 aa13.04□□□□□ -0.32
HOXD3-204ENST00000459979 PRR9Q5T870 116 aa13.04□□□□□ -0.32
HOXD3-204ENST00000459979 EIF4E3Q8N5X7 224 aaKnown RBP13.04□□□□□ -0.32
HOXD3-204ENST00000459979 ZNF680Q8NEM1 530 aa13.04□□□□□ -0.32
HOXD3-204ENST00000459979 CMTM2Q8TAZ6 248 aa13.04□□□□□ -0.32
HOXD3-204ENST00000459979 ACTR3CQ9C0K3 210 aaPredicted RBP13.04□□□□□ -0.32
HOXD3-204ENST00000459979 SNURFLB1AK76 121 aa13.03□□□□□ -0.32
HOXD3-204ENST00000459979 ATP5G1P05496 136 aa13.03□□□□□ -0.32
HOXD3-204ENST00000459979 GCHFRP30047 84 aa13.03□□□□□ -0.32
HOXD3-204ENST00000459979 ATP5G3P48201 142 aa13.03□□□□□ -0.32
HOXD3-204ENST00000459979 C11orf72Q8NBR9 251 aa13.03□□□□□ -0.32
HOXD3-204ENST00000459979 Q8TAT8 98 aa13.03□□□□□ -0.32
HOXD3-204ENST00000459979 ST6GAL2Q96JF0 529 aa13.03□□□□□ -0.32
HOXD3-204ENST00000459979 CYTL1Q9NRR1 136 aa13.03□□□□□ -0.32
HOXD3-204ENST00000459979 CXorf1O96002 111 aa13.02□□□□□ -0.33
HOXD3-204ENST00000459979 ZNF345Q14585 488 aa13.02□□□□□ -0.33
HOXD3-204ENST00000459979 TMEM88Q6PEY1 159 aa13.02□□□□□ -0.33
HOXD3-204ENST00000459979 HYLS1Q96M11 299 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms