RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 F8WEM9 126 aa13.72□□□□□ -0.21
PTPRF-209ENST00000438120 LGALS1P09382 135 aaKnown RBP13.72□□□□□ -0.21
PTPRF-209ENST00000438120 GFRA4Q9GZZ7 299 aa13.72□□□□□ -0.21
PTPRF-209ENST00000438120 ANXA2RQ3ZCQ2 193 aa13.71□□□□□ -0.21
PTPRF-209ENST00000438120 PLA2G2CQ5R387 149 aa13.71□□□□□ -0.21
PTPRF-209ENST00000438120 HAPLN4Q86UW8 402 aa13.71□□□□□ -0.21
PTPRF-209ENST00000438120 GRNP28799 593 aaKnown RBP13.71□□□□□ -0.21
PTPRF-209ENST00000438120 ETV2O00321 342 aaPredicted RBP13.71□□□□□ -0.22
PTPRF-209ENST00000438120 ZSWIM8A7E2V4 1837 aa13.7□□□□□ -0.22
PTPRF-209ENST00000438120 ZNRF2Q8NHG8 242 aa13.7□□□□□ -0.22
PTPRF-209ENST00000438120 PLXNA3P51805 1871 aa13.7□□□□□ -0.22
PTPRF-209ENST00000438120 ZNF726P1Q15940 193 aa13.7□□□□□ -0.22
PTPRF-209ENST00000438120 RSPO1Q2MKA7 263 aaPredicted RBP13.7□□□□□ -0.22
PTPRF-209ENST00000438120 C2orf66Q6UXQ4 117 aa13.7□□□□□ -0.22
PTPRF-209ENST00000438120 GAGE6Q13070 117 aa13.7□□□□□ -0.22
PTPRF-209ENST00000438120 ZNF114Q8NC26 417 aa13.7□□□□□ -0.22
PTPRF-209ENST00000438120 IGHV1OR15-1A0A075B7D0 117 aa13.69□□□□□ -0.22
PTPRF-209ENST00000438120 ZNF561-AS1K7EIQ3 104 aa13.69□□□□□ -0.22
PTPRF-209ENST00000438120 ZNF664Q8N3J9 261 aa13.69□□□□□ -0.22
PTPRF-209ENST00000438120 SIP14410 1827 aa13.69□□□□□ -0.22
PTPRF-209ENST00000438120 J3QKU1 62 aa13.69□□□□□ -0.22
PTPRF-209ENST00000438120 NOTCH3Q9UM47 2321 aa13.69□□□□□ -0.22
PTPRF-209ENST00000438120 C15orf65H3BRN8 121 aa13.69□□□□□ -0.22
PTPRF-209ENST00000438120 DLX4Q92988 240 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-209ENST00000438120 PMVKQ15126 192 aa13.69□□□□□ -0.22
PTPRF-209ENST00000438120 TRBV25-1A0A075B6N4 114 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 K7EM74 188 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 PRSS46E5RG02 174 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 GAGE2EQ4V326 116 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 GAGE2DQ9UEU5 116 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 GAGE2AQ6NT46 116 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 ANAPC10Q9UM13 185 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 FAM104BQ5XKR9 115 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 NXPH4O95158 308 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 PRSS57Q6UWY2 283 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 C18orf32Q8TCD1 76 aa13.68□□□□□ -0.22
PTPRF-209ENST00000438120 GAGE2BQ13066 116 aa13.67□□□□□ -0.22
PTPRF-209ENST00000438120 I3L3M4 83 aa13.67□□□□□ -0.22
PTPRF-209ENST00000438120 IGLV1-44P01699 117 aa13.67□□□□□ -0.22
PTPRF-209ENST00000438120 ZNF492Q9P255 531 aa13.67□□□□□ -0.22
PTPRF-209ENST00000438120 SDHAF1A6NFY7 115 aa13.67□□□□□ -0.22
PTPRF-209ENST00000438120 C9JAW5 83 aa13.67□□□□□ -0.22
PTPRF-209ENST00000438120 CDKN1BP46527 198 aa13.67□□□□□ -0.22
PTPRF-209ENST00000438120 DOCK9Q9BZ29 2069 aa13.67□□□□□ -0.22
PTPRF-209ENST00000438120 NDUFA4O00483 81 aa13.66□□□□□ -0.22
PTPRF-209ENST00000438120 PRR25Q96S07 402 aa13.66□□□□□ -0.22
PTPRF-209ENST00000438120 H3BRN7 92 aa13.66□□□□□ -0.22
PTPRF-209ENST00000438120 MRPL51Q4U2R6 128 aaKnown RBP13.66□□□□□ -0.22
PTPRF-209ENST00000438120 CACNA1HO95180 2353 aa13.66□□□□□ -0.22
PTPRF-209ENST00000438120 PRSS33Q8NF86 280 aa13.66□□□□□ -0.22
PTPRF-209ENST00000438120 CLPSL2Q6UWE3 100 aa13.66□□□□□ -0.22
PTPRF-209ENST00000438120 RNASE13Q5GAN3 156 aaKnown RBP13.65□□□□□ -0.22
PTPRF-209ENST00000438120 RHODO00212 210 aa13.65□□□□□ -0.22
PTPRF-209ENST00000438120 ZNF124Q15973 351 aa13.65□□□□□ -0.22
PTPRF-209ENST00000438120 CFPP27918 469 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 F6UB75 175 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 WT1P19544 449 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-209ENST00000438120 HLA-DMBP28068 263 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 SLAQ13239 276 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 Q8N8P6 123 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 MRAPQ8TCY5 172 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 ZFAND6Q6FIF0 208 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 ZC2HC1AQ96GY0 325 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 C17orf77Q96MU5 243 aa13.64□□□□□ -0.23
PTPRF-209ENST00000438120 C22orf46C9J442 243 aa13.63□□□□□ -0.23
PTPRF-209ENST00000438120 RLFQ13129 1914 aa13.63□□□□□ -0.23
PTPRF-209ENST00000438120 SPRNQ5BIV9 151 aa13.63□□□□□ -0.23
PTPRF-209ENST00000438120 KLF12Q9Y4X4 402 aa13.63□□□□□ -0.23
PTPRF-209ENST00000438120 DLEU1O43261 78 aa13.63□□□□□ -0.23
PTPRF-209ENST00000438120 DEFB136Q30KP8 78 aa13.63□□□□□ -0.23
PTPRF-209ENST00000438120 LINC00311Q8N616 119 aa13.63□□□□□ -0.23
PTPRF-209ENST00000438120 PRB1P04280 392 aa13.63□□□□□ -0.23
PTPRF-209ENST00000438120 IGHV4-59P01825 116 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 HLA-DRB4P13762 266 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 POLR3KQ9Y2Y1 108 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-209ENST00000438120 HLA-DRB4X5D2U9 266 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 IGF2BP2-AS1Q96M15 143 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 GTSF1LQ9H1H1 148 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 CGB3P0DN86 165 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 DEFB112Q30KQ8 113 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 Q0VG73 95 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 WDR81Q562E7 1941 aa13.62□□□□□ -0.23
PTPRF-209ENST00000438120 HELZP42694 1942 aaKnown RBP13.62□□□□□ -0.23
PTPRF-209ENST00000438120 V9GYV3 84 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 SPRY2O43597 315 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 TCF15Q12870 199 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 TMEM243Q9BU79 118 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 PCNX1Q96RV3 2341 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 IGHV7-4-1A0A0J9YVY3 117 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 IGLC1P0CG04 106 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 HOXB4P17483 251 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-209ENST00000438120 CTSZQ9UBR2 303 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 E9PQ18 207 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 SHISA9B4DS77 424 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 LURAP1LQ8IV03 231 aa13.61□□□□□ -0.23
PTPRF-209ENST00000438120 ADAMTSL5Q6ZMM2 481 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 SNHG12Q9BXW3 62 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 THAP8Q8NA92 274 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 TMEM141Q96I45 108 aa13.6□□□□□ -0.23
PTPRF-209ENST00000438120 NDUFS6O75380 124 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms