RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ZNF575Q86XF7 245 aa10.57□□□□□ -0.72
COL6A3-207ENST00000433762 EEF1AKMT3Q96AZ1 226 aa10.57□□□□□ -0.72
COL6A3-207ENST00000433762 MAP1LC3AQ9H492 121 aa10.57□□□□□ -0.72
COL6A3-207ENST00000433762 PRSS47A8MTI9 375 aa10.57□□□□□ -0.72
COL6A3-207ENST00000433762 C2orf91Q6ZV80 131 aa10.57□□□□□ -0.72
COL6A3-207ENST00000433762 IFI27L1Q96BM0 104 aa10.57□□□□□ -0.72
COL6A3-207ENST00000433762 U3KQE9 123 aa10.57□□□□□ -0.72
COL6A3-207ENST00000433762 TPRP12270 2363 aaKnown RBP10.56□□□□□ -0.72
COL6A3-207ENST00000433762 TMSB15BA0A087X1C1 80 aa10.56□□□□□ -0.72
COL6A3-207ENST00000433762 NPYP01303 97 aa10.56□□□□□ -0.72
COL6A3-207ENST00000433762 FGF6P10767 208 aa10.56□□□□□ -0.72
COL6A3-207ENST00000433762 BOD1L2Q8IYS8 172 aa10.56□□□□□ -0.72
COL6A3-207ENST00000433762 RNF185Q96GF1 192 aa10.56□□□□□ -0.72
COL6A3-207ENST00000433762 LENEPQ9Y5L5 61 aa10.56□□□□□ -0.72
COL6A3-207ENST00000433762 ABCA4P78363 2273 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 ATP6V0E1O15342 81 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 NCR2O95944 276 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 ACACBO00763 2458 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 CENPVL3A0A0U1RRI6 287 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 CLPSL1A2RUU4 121 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 IGHV3-23P01764 117 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 OR8A1Q8NGG7 326 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 Q8TAT8 98 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 ADGRG4Q8IZF6 3080 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 SPTA1P02549 2419 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 PKD1L2Q7Z442 2459 aa10.55□□□□□ -0.72
COL6A3-207ENST00000433762 IGHV4-4A0A075B6R2 117 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 MUC21A0A0G2JKD1 596 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 MUC21A0A140T8X8 626 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 BRI3O95415 125 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 ORM1P02763 201 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 CLEC3BP05452 202 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 LOXL1Q08397 574 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-207ENST00000433762 FAM106AQ4KMX7 169 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 MUC21Q5SSG8 566 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 C9orf47Q6ZRZ4 202 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 PIP4P2Q8N4L2 257 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 CCDC140Q96MF4 163 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 METTL26Q96S19 204 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 ATRXP46100 2492 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 LOC389332A0A1B0GUA5 103 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 FAM223BA6NKX1 122 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 FCER1GP30273 86 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 FAM223AQ8IWN6 122 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 OR4X2Q8NGF9 303 aa10.54□□□□□ -0.72
COL6A3-207ENST00000433762 H0Y8G0 127 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 SAA4P35542 130 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 LMO4P61968 165 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 TMEM97Q5BJF2 176 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 OR4C5Q8NGB2 326 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 PEF1Q9UBV8 284 aaKnown RBP10.53□□□□□ -0.72
COL6A3-207ENST00000433762 SMPXQ9UHP9 88 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 NDUFS7O75251 213 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 CACNG7P62955 275 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 VAMP3Q15836 100 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 ECSCRQ19T08 205 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 C19orf54Q5BKX5 351 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 IL17RELQ6ZVW7 336 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 ZMAT4Q9H898 229 aa10.53□□□□□ -0.72
COL6A3-207ENST00000433762 SMAD7O15105 426 aaKnown RBP10.52□□□□□ -0.73
COL6A3-207ENST00000433762 NPFFO15130 113 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 HLA-DRB4P13762 266 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 HLA-DMBP28068 263 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 HSD52Q0P140 79 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 C5orf56Q8N8D9 126 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 HLA-DRB4X5D2U9 266 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 SMG1Q96Q15 3661 aaKnown RBP10.52□□□□□ -0.73
COL6A3-207ENST00000433762 KIR3DS1Q14943 382 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 ANKRD39Q53RE8 183 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 TMEM78Q5T7P6 136 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 Q8N8P6 123 aa10.52□□□□□ -0.73
COL6A3-207ENST00000433762 MCRIP2Q9BUT9 160 aaKnown RBP10.52□□□□□ -0.73
COL6A3-207ENST00000433762 KALRNO60229 2985 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 A6NDN8 102 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 SNAI2O43623 268 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 TNFRSF6BO95407 300 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 C9orf139Q6ZV77 190 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 SMIM15Q7Z3B0 74 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 TIMM8BQ9Y5J9 83 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-207ENST00000433762 TRAV8-2A0A0B4J237 113 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 ATP5G2Q06055 141 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 PRSS57Q6UWY2 283 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 Q6ZVH6 145 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 AGPAT4-IT1Q9H0P7 198 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 TP73-AS1Q9UF72 201 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 MOB4Q9Y3A3 225 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 ITPR1Q14643 2758 aa10.51□□□□□ -0.73
COL6A3-207ENST00000433762 A0A1W2PPR1 153 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 PRAC2D3DTV9 90 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 H3BUA1 57 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 ATP5LO75964 103 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 ERCC8Q13216 396 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 CLEC19AQ6UXS0 136 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 C8orf86Q6ZUL3 223 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 IGKV3D-20A0A0C4DH25 116 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 A1L4Q6 167 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 H3BRM9 83 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 HIGD1BQ9P298 99 aa10.5□□□□□ -0.73
COL6A3-207ENST00000433762 IGLV2-18A0A075B6J9 118 aa10.49□□□□□ -0.73
COL6A3-207ENST00000433762 IGFL4Q6B9Z1 124 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms