RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 EXOC3-AS1Q8N2X6 119 aa10.03□□□□□ -0.8
SDC1-204ENST00000429035 MRPL53Q96EL3 112 aaKnown RBP10.03□□□□□ -0.8
SDC1-204ENST00000429035 LYRM2Q9NU23 88 aaPredicted RBP10.03□□□□□ -0.8
SDC1-204ENST00000429035 FUT9Q9Y231 359 aa10.03□□□□□ -0.8
SDC1-204ENST00000429035 A0A096LPF7 62 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 S100A11P31949 105 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 LINC00315P59091 139 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 CD300CQ08708 224 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 DAZ2Q13117 558 aaKnown RBP10.02□□□□□ -0.81
SDC1-204ENST00000429035 FAM122CQ6P4D5 195 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 EIF4E3Q8N5X7 224 aaKnown RBP10.02□□□□□ -0.81
SDC1-204ENST00000429035 TMEM252Q8N6L7 170 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 ARPC5LQ9BPX5 153 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 C11orf1Q9H5F2 150 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 AAMDCQ9H7C9 122 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 PRELID1Q9Y255 219 aa10.02□□□□□ -0.81
SDC1-204ENST00000429035 A0A1W2PPQ1 181 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 H3BNG1 76 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 RGS13O14921 159 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 GPX1P07203 203 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 H2AFB2P0C5Z0 115 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 HIST1H1EP10412 219 aaKnown RBP10.01□□□□□ -0.81
SDC1-204ENST00000429035 KRTAP10-2P60368 255 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 ICAM4Q14773 271 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 VWC2Q2TAL6 325 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 GCSAMLQ5JQS6 135 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 C11orf72Q8NBR9 251 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 VSIG2Q96IQ7 327 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 MRPL16Q9NX20 251 aaKnown RBP10.01□□□□□ -0.81
SDC1-204ENST00000429035 KLF12Q9Y4X4 402 aa10.01□□□□□ -0.81
SDC1-204ENST00000429035 KLLNB2CW77 178 aa10□□□□□ -0.81
SDC1-204ENST00000429035 MPDU1O75352 247 aa10□□□□□ -0.81
SDC1-204ENST00000429035 NDUFB4O95168 129 aa10□□□□□ -0.81
SDC1-204ENST00000429035 TCL1AP56279 114 aa10□□□□□ -0.81
SDC1-204ENST00000429035 TMEM78Q5T7P6 136 aa10□□□□□ -0.81
SDC1-204ENST00000429035 THAP6Q8TBB0 222 aa10□□□□□ -0.81
SDC1-204ENST00000429035 LINC00477Q96M19 166 aa10□□□□□ -0.81
SDC1-204ENST00000429035 NPCDR1Q9BY65 106 aa10□□□□□ -0.81
SDC1-204ENST00000429035 AGPAT4-IT1Q9H0P7 198 aa10□□□□□ -0.81
SDC1-204ENST00000429035 SCRT2Q9NQ03 307 aa10□□□□□ -0.81
SDC1-204ENST00000429035 TMEM14CQ9P0S9 112 aa10□□□□□ -0.81
SDC1-204ENST00000429035 ICOSQ9Y6W8 199 aa10□□□□□ -0.81
SDC1-204ENST00000429035 APOBP04114 4563 aaKnown RBP10□□□□□ -0.81
SDC1-204ENST00000429035 SIVA1O15304 175 aa9.99□□□□□ -0.81
SDC1-204ENST00000429035 PAX4O43316 350 aa9.99□□□□□ -0.81
SDC1-204ENST00000429035 NXPH4O95158 308 aa9.99□□□□□ -0.81
SDC1-204ENST00000429035 PDE6HQ13956 83 aa9.99□□□□□ -0.81
SDC1-204ENST00000429035 PRR9Q5T870 116 aa9.99□□□□□ -0.81
SDC1-204ENST00000429035 SLC25A2Q9BXI2 301 aa9.99□□□□□ -0.81
SDC1-204ENST00000429035 TP53TG3Q9ULZ0 132 aa9.99□□□□□ -0.81
SDC1-204ENST00000429035 FAM240BA0A1B0GVZ2 78 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 OR10J4P0C629 311 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 ZNF415Q09FC8 603 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 ATP6V1FQ16864 119 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 ANXA2RQ3ZCQ2 193 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 MIR17HGQ75NE6 70 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 Q8N1X5 172 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 Q8TAT8 98 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 VGLL1Q99990 258 aa9.98□□□□□ -0.81
SDC1-204ENST00000429035 IGHV1OR15-1A0A075B7D0 117 aa9.97□□□□□ -0.81
SDC1-204ENST00000429035 SPINK4O60575 86 aa9.97□□□□□ -0.81
SDC1-204ENST00000429035 ZNF324O75467 553 aaPredicted RBP9.97□□□□□ -0.81
SDC1-204ENST00000429035 BTF3P20290 206 aaKnown RBP9.97□□□□□ -0.81
SDC1-204ENST00000429035 FUSP35637 526 aaKnown RBP eCLIP9.97□□□□□ -0.812e-6■■□□□ 12.3
SDC1-204ENST00000429035 LRRC37A5PQ49AS3 106 aa9.97□□□□□ -0.81
SDC1-204ENST00000429035 IBA57Q5T440 356 aaKnown RBP9.97□□□□□ -0.81
SDC1-204ENST00000429035 Q6ZQT7 251 aa9.97□□□□□ -0.81
SDC1-204ENST00000429035 ST6GAL2Q96JF0 529 aa9.97□□□□□ -0.81
SDC1-204ENST00000429035 FAM19A4Q96LR4 140 aa9.97□□□□□ -0.81
SDC1-204ENST00000429035 DNAH5Q8TE73 4624 aa9.96□□□□□ -0.81
SDC1-204ENST00000429035 CRISP2P16562 243 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 NHLH2Q02577 135 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 MUC21Q5SSG8 566 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 C9orf47Q6ZRZ4 202 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 ZFAND2AQ8N6M9 145 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 OR5C1Q8NGR4 320 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 PHYHIPLQ96FC7 376 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 C18orf15Q96N68 181 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 C8orf49Q96NF6 230 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 LINC00467Q9BRT7 94 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 PAXXQ9BUH6 204 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 OR51M1Q9H341 326 aa9.96□□□□□ -0.82
SDC1-204ENST00000429035 EREGO14944 169 aa9.95□□□□□ -0.82
SDC1-204ENST00000429035 OR7C2O60412 319 aa9.95□□□□□ -0.82
SDC1-204ENST00000429035 SIX6O95475 246 aa9.95□□□□□ -0.82
SDC1-204ENST00000429035 NBEAP1P0C6P0 100 aa9.95□□□□□ -0.82
SDC1-204ENST00000429035 ERVFC1-1P60608 527 aa9.95□□□□□ -0.82
SDC1-204ENST00000429035 MZT2BQ6NZ67 158 aa9.95□□□□□ -0.82
SDC1-204ENST00000429035 CCDC32Q9BV29 185 aa9.95□□□□□ -0.82
SDC1-204ENST00000429035 PTTG2Q9NZH5 202 aa9.95□□□□□ -0.82
SDC1-204ENST00000429035 TRGV4A0A0C4DH28 118 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 E5RGE8 158 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 CSN1S1P47710 185 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 ZNF138P52744 262 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 IL15RAQ13261 267 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 CHAC2Q8WUX2 184 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 PCNPQ8WW12 178 aaKnown RBP9.94□□□□□ -0.82
SDC1-204ENST00000429035 FAM167A-AS1Q96KT0 104 aa9.94□□□□□ -0.82
SDC1-204ENST00000429035 MRPL32Q9BYC8 188 aaKnown RBP9.94□□□□□ -0.82
SDC1-204ENST00000429035 SLC25A31Q9H0C2 315 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms