RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ATRXP46100 2492 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 TIRAPP58753 221 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 MPV17L2Q567V2 206 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 RUSC1-AS1Q66K80 236 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 AGMATQ9BSE5 352 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 KLF2Q9Y5W3 355 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-204ENST00000423058 ARMS2P0C7Q2 107 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 SHANK2-AS3Q9BTD1 123 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 NUP210LQ5VU65 1888 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 C9JAW5 83 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 H3BUA1 57 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 C1QCP02747 245 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 HLA-DRB4P13762 266 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 CFPP27918 469 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 RNF152Q8N8N0 203 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 MRPL36Q9P0J6 103 aaKnown RBP5.54□□□□□ -1.52
SCN1A-204ENST00000423058 HLA-DRB4X5D2U9 266 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 TRBV24-1A0A075B6N3 115 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 TRBV6-6A0A0A6YYG2 114 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 IGHV3-16A0A0C4DH30 117 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 ETDCA0A1B0GVM5 59 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 ELANEP08246 267 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 CITED1Q99966 193 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 TP53TG1Q9Y2A0 90 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 IGKV1OR2-108A0A075B7D4 117 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 ATP6V0E1O15342 81 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 PAX9P55771 341 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 HAMPP81172 84 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 C1orf122Q6ZSJ8 110 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 PAQR4Q8N4S7 273 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-204ENST00000423058 TMEM14BQ9NUH8 114 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 IGKV1-5P01602 117 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 YPEL3P61236 119 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-204ENST00000423058 ZNRF2Q8NHG8 242 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 TGFBR3LH3BV60 316 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 TFF1P04155 84 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 CFHR2P36980 270 aa5.54□□□□□ -1.52
SCN1A-204ENST00000423058 TNRC6BQ9UPQ9 1833 aaKnown RBP5.53□□□□□ -1.52
SCN1A-204ENST00000423058 RNF126Q9BV68 326 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 ICOSQ9Y6W8 199 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 MALRD1Q5VYJ5 2156 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 C5orf63A6NC05 138 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 BVES-AS1Q5T3Y7 98 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 CLPSL1A2RUU4 121 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 SPART-AS1P0CW21 52 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 NBL1P41271 181 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 RPP25LQ8N5L8 163 aaKnown RBP5.53□□□□□ -1.52
SCN1A-204ENST00000423058 VPREB3Q9UKI3 123 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 PRSS46E5RG02 174 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 SYS1-DBNDD2H3BUS1 97 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 NMSQ5H8A3 153 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 C10orf55Q5SWW7 151 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 C9orf153Q5TBE3 101 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 CFHR4Q92496 578 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 CREBBPQ92793 2442 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 ZNF124Q15973 351 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 C8orf86Q6ZUL3 223 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 DEFB105AQ8NG35 78 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 Q9HAA7 133 aa5.53□□□□□ -1.52
SCN1A-204ENST00000423058 DSCAML1Q8TD84 2053 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 LAIR2Q6ISS4 152 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 TRACP01848 142 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 MRPL23Q16540 153 aaKnown RBP5.52□□□□□ -1.53
SCN1A-204ENST00000423058 LYPD2Q6UXB3 125 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 FOXI2Q6ZQN5 318 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 KLK9Q9UKQ9 250 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 DEFB104AQ8WTQ1 72 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 HS3ST6Q96QI5 342 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 SORL1Q92673 2214 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 IGKV1-9A0A0C4DH69 117 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 RNASE2P10153 161 aaKnown RBP5.52□□□□□ -1.53
SCN1A-204ENST00000423058 UBE2AP49459 152 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 MAPK1IP1LQ8NDC0 245 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 FOXG1P55316 489 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-204ENST00000423058 LINC01545Q5VT33 79 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 OR11H6Q8NGC7 330 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 MRPL53Q96EL3 112 aaKnown RBP5.52□□□□□ -1.53
SCN1A-204ENST00000423058 C16orf74Q96GX8 76 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 PYGO2Q9BRQ0 406 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 C14orf177Q52M58 125 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 AMN1Q8IY45 258 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 C15orf53Q8NAA6 179 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 GSN-AS1Q9NRJ2 163 aa5.52□□□□□ -1.53
SCN1A-204ENST00000423058 FGF16O43320 207 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 KIR3DS1Q14943 382 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 GLRX5Q86SX6 157 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 LTBP1Q14766 1721 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 FAM231BA6NCW3 169 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HERV-K104P63124 156 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 Q86TA4 180 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 IGFL3Q6UXB1 125 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 LINC01551Q86U37 167 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 FGFBP3Q8TAT2 258 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 ATG2AQ2TAZ0 1938 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 IGKV1D-17A0A075B6S4 117 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 C9JQL5 133 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 K7EMI3 77 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 Q6P435 159 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 NOP10Q9NPE3 64 aaKnown RBP5.51□□□□□ -1.53
SCN1A-204ENST00000423058 PRR14LQ5THK1 2151 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms