RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 EBLN2Q6P2I7 272 aa12.84□□□□□ -0.35
CCDC28B-202ENST00000421922 SMIM12Q96EX1 92 aa12.84□□□□□ -0.35
CCDC28B-202ENST00000421922 ZFP30Q9Y2G7 519 aa12.84□□□□□ -0.35
CCDC28B-202ENST00000421922 TRBV20OR9-2A0A075B6H5 130 aa12.83□□□□□ -0.36
CCDC28B-202ENST00000421922 LTAP01374 205 aa12.83□□□□□ -0.36
CCDC28B-202ENST00000421922 RHEBQ15382 184 aa12.83□□□□□ -0.36
CCDC28B-202ENST00000421922 LINC01551Q86U37 167 aa12.83□□□□□ -0.36
CCDC28B-202ENST00000421922 FAM24BQ8N5W8 94 aa12.83□□□□□ -0.36
CCDC28B-202ENST00000421922 NHLRC2Q8NBF2 726 aa12.83□□□□□ -0.36
CCDC28B-202ENST00000421922 VGLL1Q99990 258 aa12.83□□□□□ -0.36
CCDC28B-202ENST00000421922 AURKAIP1Q9NWT8 199 aaPredicted RBP12.83□□□□□ -0.36
CCDC28B-202ENST00000421922 IZUMO1RA6ND01 250 aa12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 B4DEV8 164 aa12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 CT45A10P0DMU9 189 aa12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 CMC4P56277 68 aaPredicted RBP12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 ERCC8Q13216 396 aa12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 SAPCD1Q5SSQ6 148 aa12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 OR8A1Q8NGG7 326 aa12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 OCC1Q8TAD7 63 aa12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 PPP1R14DQ9NXH3 145 aa12.82□□□□□ -0.36
CCDC28B-202ENST00000421922 ZNF138P52744 262 aa12.81□□□□□ -0.36
CCDC28B-202ENST00000421922 DEFB131AP59861 70 aa12.81□□□□□ -0.36
CCDC28B-202ENST00000421922 C9orf47Q6ZRZ4 202 aa12.81□□□□□ -0.36
CCDC28B-202ENST00000421922 Q8TAT8 98 aa12.81□□□□□ -0.36
CCDC28B-202ENST00000421922 GPR61Q9BZJ8 451 aa12.81□□□□□ -0.36
CCDC28B-202ENST00000421922 RPS10P5Q9NQ39 176 aa12.81□□□□□ -0.36
CCDC28B-202ENST00000421922 ANK2Q01484 3957 aa12.81□□□□□ -0.36
CCDC28B-202ENST00000421922 DUSP14O95147 198 aaKnown RBP12.8□□□□□ -0.36
CCDC28B-202ENST00000421922 IGLV2-11P01706 119 aa12.8□□□□□ -0.36
CCDC28B-202ENST00000421922 MT-ND4LP03901 98 aa12.8□□□□□ -0.36
CCDC28B-202ENST00000421922 PRR27Q6MZM9 219 aa12.8□□□□□ -0.36
CCDC28B-202ENST00000421922 TMEM183AQ8IXX5 376 aa12.8□□□□□ -0.36
CCDC28B-202ENST00000421922 LINC00477Q96M19 166 aa12.8□□□□□ -0.36
CCDC28B-202ENST00000421922 OR11H12B2RN74 326 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 NPIPB6E9PJ23 425 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 F6UB75 175 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 ZNF705DP0CH99 300 aaPredicted RBP12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 ZNF705BP0CI00 300 aaPredicted RBP12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 FOXI2Q6ZQN5 318 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 C15orf54Q8N8G6 183 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 ISOC2Q96AB3 205 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 AGPAT4-IT1Q9H0P7 198 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 MAP6D1Q9H9H5 199 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 C7orf77A4D0Y5 90 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 DEFB1P60022 68 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 ERVFC1-1P60608 527 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 DAZAP1Q96EP5 407 aaKnown RBP12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 PRR25Q96S07 402 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 ZNF492Q9P255 531 aa12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 ZNF256Q9Y2P7 627 aaPredicted RBP12.79□□□□□ -0.36
CCDC28B-202ENST00000421922 K7EN84 100 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 PPP1R2P9O14990 202 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 GCGP01275 180 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 OR5I1Q13606 314 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 SMUG1Q53HV7 270 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 OR4B1Q8NGF8 309 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 SFRP2Q96HF1 295 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 ASCL2Q99929 193 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 SAV1Q9H4B6 383 aaPredicted RBP12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 LENEPQ9Y5L5 61 aa12.78□□□□□ -0.36
CCDC28B-202ENST00000421922 A0A0J9YX75 114 aa12.77□□□□□ -0.37
CCDC28B-202ENST00000421922 IGLV2-8P01709 118 aa12.77□□□□□ -0.37
CCDC28B-202ENST00000421922 RNF212Q495C1 297 aa12.77□□□□□ -0.37
CCDC28B-202ENST00000421922 ACTL10Q5JWF8 245 aa12.77□□□□□ -0.37
CCDC28B-202ENST00000421922 WFDC9Q8NEX5 89 aa12.77□□□□□ -0.37
CCDC28B-202ENST00000421922 ANAPC16Q96DE5 110 aa12.77□□□□□ -0.37
CCDC28B-202ENST00000421922 H7BYZ3 331 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 IGLL1P15814 213 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 LEPP41159 167 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 IBA57Q5T440 356 aaKnown RBP12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 ATRAIDQ6UW56 229 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 GTSCR1Q86UQ5 136 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 OR10G8Q8NGN5 311 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 C8orf49Q96NF6 230 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 MLST8Q9BVC4 326 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 CTDSP1Q9GZU7 261 aa12.76□□□□□ -0.37
CCDC28B-202ENST00000421922 SORL1Q92673 2214 aa12.75□□□□□ -0.37
CCDC28B-202ENST00000421922 A0A087WWC5 75 aa12.75□□□□□ -0.37
CCDC28B-202ENST00000421922 KNCNA6PVL3 124 aa12.75□□□□□ -0.37
CCDC28B-202ENST00000421922 IGKV3-20P01619 116 aa12.75□□□□□ -0.37
CCDC28B-202ENST00000421922 GDF5OSQ5U4N7 250 aa12.75□□□□□ -0.37
CCDC28B-202ENST00000421922 ZC2HC1AQ96GY0 325 aa12.75□□□□□ -0.37
CCDC28B-202ENST00000421922 P01737 135 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 HLA-DRB4P13762 266 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 TSPOP30536 169 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 BEAN1Q3B7T3 259 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 ODF3L2Q3SX64 289 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 PRR31Q5SQ13 230 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 FAM162BQ5T6X4 162 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 APRG1Q8IVJ8 170 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 STHQ8IWL8 128 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 RNASE7Q9H1E1 156 aaKnown RBP12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 OSTCQ9NRP0 149 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 HLA-DRB4X5D2U9 266 aa12.74□□□□□ -0.37
CCDC28B-202ENST00000421922 TRBV7-9A0A0J9YWB2 115 aa12.73□□□□□ -0.37
CCDC28B-202ENST00000421922 ZNF705GA8MUZ8 300 aaPredicted RBP12.73□□□□□ -0.37
CCDC28B-202ENST00000421922 J3KRW8 73 aa12.73□□□□□ -0.37
CCDC28B-202ENST00000421922 WIPF1O43516 503 aa12.73□□□□□ -0.37
CCDC28B-202ENST00000421922 GATCO43716 136 aaKnown RBP12.73□□□□□ -0.37
CCDC28B-202ENST00000421922 GPX1P07203 203 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms