RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 CENPVL3A0A0U1RRI6 287 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 PAX2Q02962 417 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 PGPEP1Q9NXJ5 209 aa13.73□□□□□ -0.21
PHRF1-202ENST00000413872 Q71RC1 249 aaPredicted RBP13.72□□□□□ -0.21
PHRF1-202ENST00000413872 JPT2Q9H910 190 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 IGHV4-59P01825 116 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 TYMSP04818 313 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 HIST3H2BBQ8N257 126 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 LINC00479Q96M42 142 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 IGHV4-39P01824 125 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 TMEM158Q8WZ71 300 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 TTC32Q5I0X7 151 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 ORAOV1Q8WV07 137 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 PRR25Q96S07 402 aa13.72□□□□□ -0.21
PHRF1-202ENST00000413872 F5H768 121 aa13.71□□□□□ -0.21
PHRF1-202ENST00000413872 NDUFAF3Q9BU61 184 aa13.71□□□□□ -0.21
PHRF1-202ENST00000413872 IGHV4-30-2A0A087WSY4 118 aa13.71□□□□□ -0.21
PHRF1-202ENST00000413872 LGALS1P09382 135 aaKnown RBP13.71□□□□□ -0.21
PHRF1-202ENST00000413872 SPXQ9BT56 116 aa13.71□□□□□ -0.22
PHRF1-202ENST00000413872 PRB1P04280 392 aa13.7□□□□□ -0.22
PHRF1-202ENST00000413872 ACACBO00763 2458 aa13.7□□□□□ -0.22
PHRF1-202ENST00000413872 SRSF2Q01130 221 aaKnown RBP13.7□□□□□ -0.22
PHRF1-202ENST00000413872 FOXE3Q13461 319 aa13.7□□□□□ -0.22
PHRF1-202ENST00000413872 FAM231DQ6ZW35 169 aa13.7□□□□□ -0.22
PHRF1-202ENST00000413872 MED13LQ71F56 2210 aa13.7□□□□□ -0.22
PHRF1-202ENST00000413872 MYMXA0A1B0GTQ4 84 aa13.7□□□□□ -0.22
PHRF1-202ENST00000413872 TNFRSF6BO95407 300 aa13.7□□□□□ -0.22
PHRF1-202ENST00000413872 IGHV3-64A0A075B6Q5 118 aa13.69□□□□□ -0.22
PHRF1-202ENST00000413872 M0R2P5 195 aa13.69□□□□□ -0.22
PHRF1-202ENST00000413872 PHLDA1Q8WV24 401 aaPredicted RBP13.69□□□□□ -0.22
PHRF1-202ENST00000413872 AZU1P20160 251 aa13.69□□□□□ -0.22
PHRF1-202ENST00000413872 TRBV25-1A0A075B6N4 114 aa13.69□□□□□ -0.22
PHRF1-202ENST00000413872 IGLC7A0M8Q6 106 aa13.69□□□□□ -0.22
PHRF1-202ENST00000413872 PRR31Q5SQ13 230 aa13.69□□□□□ -0.22
PHRF1-202ENST00000413872 NPBQ8NG41 125 aa13.69□□□□□ -0.22
PHRF1-202ENST00000413872 CST9LQ9H4G1 147 aa13.69□□□□□ -0.22
PHRF1-202ENST00000413872 PAX4O43316 350 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 ARFGEF3Q5TH69 2177 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 DENND4CQ5VZ89 1909 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 A0A0U1RRA0 63 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 ERG28Q9UKR5 140 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 PTPRQQ9UMZ3 2332 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 GGTLC3B5MD39 225 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 DMRTA1Q5VZB9 504 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 ZNF491Q8N8L2 437 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 KIF26AQ9ULI4 1882 aaPredicted RBP13.68□□□□□ -0.22
PHRF1-202ENST00000413872 H3BUT2 72 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 TSPAN13O95857 204 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 SLAQ13239 276 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 FOXI2Q6ZQN5 318 aa13.68□□□□□ -0.22
PHRF1-202ENST00000413872 MRPL53Q96EL3 112 aaKnown RBP13.68□□□□□ -0.22
PHRF1-202ENST00000413872 TRAV13-1A0A0B4J241 112 aa13.67□□□□□ -0.22
PHRF1-202ENST00000413872 FAM104BQ5XKR9 115 aa13.67□□□□□ -0.22
PHRF1-202ENST00000413872 SEM1Q6ZVN7 128 aa13.67□□□□□ -0.22
PHRF1-202ENST00000413872 C8orf49Q96NF6 230 aa13.67□□□□□ -0.22
PHRF1-202ENST00000413872 KLK9Q9UKQ9 250 aa13.67□□□□□ -0.22
PHRF1-202ENST00000413872 I3L3M4 83 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 CCL24O00175 119 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 TIMM21Q9BVV7 248 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 TMEM141Q96I45 108 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 LENEPQ9Y5L5 61 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 C2orf16Q68DN1 1984 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 GAGE12JA6NER3 117 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 PLA2G5P39877 138 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 PRR20EP86478 221 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 PRR20CP86479 221 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 PRR20DP86480 221 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 PRR20BP86481 221 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 PRR20AP86496 221 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 GAGE1Q13065 139 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 GAGE4Q13068 117 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 GAGE5Q13069 117 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 GAGE13Q4V321 117 aa13.66□□□□□ -0.22
PHRF1-202ENST00000413872 HOXD3P31249 432 aaPredicted RBP13.66□□□□□ -0.22
PHRF1-202ENST00000413872 SHANK1Q9Y566 2161 aa13.65□□□□□ -0.22
PHRF1-202ENST00000413872 KNCNA6PVL3 124 aa13.65□□□□□ -0.22
PHRF1-202ENST00000413872 SMKR1H3BMG3 65 aa13.65□□□□□ -0.22
PHRF1-202ENST00000413872 SYS1-DBNDD2H3BUS1 97 aa13.65□□□□□ -0.22
PHRF1-202ENST00000413872 ANXA2RQ3ZCQ2 193 aa13.65□□□□□ -0.22
PHRF1-202ENST00000413872 HAPLN4Q86UW8 402 aa13.65□□□□□ -0.22
PHRF1-202ENST00000413872 ZMAT4Q9H898 229 aa13.65□□□□□ -0.22
PHRF1-202ENST00000413872 SSBP2P81877 361 aaPredicted RBP13.65□□□□□ -0.22
PHRF1-202ENST00000413872 MTURNQ8N3F0 131 aa13.65□□□□□ -0.23
PHRF1-202ENST00000413872 ZNF114Q8NC26 417 aa13.65□□□□□ -0.23
PHRF1-202ENST00000413872 C11orf52Q96A22 123 aa13.65□□□□□ -0.23
PHRF1-202ENST00000413872 ATXN8Q156A1 80 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 C10orf126Q8N4M7 172 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 C11orf68Q9H3H3 251 aaKnown RBP13.64□□□□□ -0.23
PHRF1-202ENST00000413872 NDUFS6O75380 124 aaKnown RBP13.64□□□□□ -0.23
PHRF1-202ENST00000413872 TMEM256Q8N2U0 113 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 FGF23Q9GZV9 251 aaPredicted RBP13.64□□□□□ -0.23
PHRF1-202ENST00000413872 GAGE12BA1L429 117 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 GAGE7O76087 117 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 GAGE12FP0CL80 117 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 GAGE12GP0CL81 117 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 GAGE12IP0CL82 117 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 Q0VG73 95 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 C9orf66Q5T8R8 295 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 PRIMA1Q86XR5 153 aa13.64□□□□□ -0.23
PHRF1-202ENST00000413872 FXYD5Q96DB9 178 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 162.3 ms