RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PRSS46E5RG02 174 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 DKK1O94907 266 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 Q0VG73 95 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 PPP1R32Q7Z5V6 425 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 CELA3AP09093 270 aa10.88□□□□□ -0.67
CCDC88A-204ENST00000413716 CDKN1BP46527 198 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 RPL18AQ02543 176 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 MINOS1Q5TGZ0 78 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 C19orf48Q6RUI8 117 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 MINOS1-NBL1R4GNA1 71 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 FAM27E3Q08E93 113 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 COL18A1P39060 1754 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 A0A0B4J2C4 111 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 CFHR3Q02985 330 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 RNASE6Q93091 150 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 NREPQ16612 68 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 COL11A2P13942 1736 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 ETDCA0A1B0GVM5 59 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 PFN1P07737 140 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 MRPL14Q6P1L8 145 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 DUX4L9Q6RFH8 374 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 CASC2Q6XLA1 102 aa10.87□□□□□ -0.67
CCDC88A-204ENST00000413716 NMSQ5H8A3 153 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 ZFP2Q6ZN57 461 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 SIVA1O15304 175 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 IL9P15248 144 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 IGHV1-2P23083 117 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 WDR83OSQ9Y284 106 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 ANGP03950 147 aaKnown RBP10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 ANKRD39Q53RE8 183 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 IGKV4-1P06312 121 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 LYL1P12980 280 aa10.86□□□□□ -0.67
CCDC88A-204ENST00000413716 NUP210Q8TEM1 1887 aaPredicted RBP10.85□□□□□ -0.67
CCDC88A-204ENST00000413716 J3QQQ9 107 aa10.85□□□□□ -0.67
CCDC88A-204ENST00000413716 MRPL23Q16540 153 aaKnown RBP10.85□□□□□ -0.67
CCDC88A-204ENST00000413716 MESP1Q9BRJ9 268 aa10.85□□□□□ -0.67
CCDC88A-204ENST00000413716 LILRA6Q6PI73 481 aa10.85□□□□□ -0.67
CCDC88A-204ENST00000413716 IGHV3-16A0A0C4DH30 117 aa10.85□□□□□ -0.67
CCDC88A-204ENST00000413716 COL24A1Q17RW2 1714 aa10.85□□□□□ -0.67
CCDC88A-204ENST00000413716 LY6G6FQ5SQ64 297 aa10.85□□□□□ -0.67
CCDC88A-204ENST00000413716 F8VRH5 84 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 DEFB125Q8N687 156 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 SIGLEC12Q96PQ1 595 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 IGHV1-3A0A0C4DH29 117 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 ARMS2P0C7Q2 107 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 CHCHD2Q9Y6H1 151 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 IGHV4-4A0A075B6R2 117 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 NPYP01303 97 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 IGKV1-5P01602 117 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 LINC01620Q4KN68 170 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 RNF5Q99942 180 aa10.84□□□□□ -0.67
CCDC88A-204ENST00000413716 SDHAF1A6NFY7 115 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 OOSP1A8MZH6 123 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 RNF183Q96D59 192 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 ZNF493Q6ZR52 646 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 TIRAPP58753 221 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 CLPSL2Q6UWE3 100 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 COX7B2Q8TF08 81 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 FNDC1Q4ZHG4 1894 aaPredicted RBP10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 HGFACQ04756 655 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 HIGD2BQ4VC39 106 aa10.83□□□□□ -0.68
CCDC88A-204ENST00000413716 C5orf64Q2M2E5 130 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 SLC25A29Q8N8R3 303 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 LINC00527Q9UJ94 153 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 CSPG4Q6UVK1 2322 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 IGHV1OR15-1A0A075B7D0 117 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 PRSS47A8MTI9 375 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 C9orf47Q6ZRZ4 202 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 C18orf32Q8TCD1 76 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 ZNF503Q96F45 646 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 IGKV3D-7A0A0C4DH55 119 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 C3orf56Q8N813 242 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 C8orf49Q96NF6 230 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 SPANXB1Q9NS25 103 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 ETV2O00321 342 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 LGALS9BQ3B8N2 356 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 LGALS9CQ6DKI2 356 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 NTN5Q8WTR8 489 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 HS3ST6Q96QI5 342 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 RHPN1-AS1Q9BWJ2 59 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 NTN3O00634 580 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 OTOGLQ3ZCN5 2332 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 FAM240AA0A1B0GVK7 77 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 ATP5G1P05496 136 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 IGHV1-8P0DP01 117 aa10.82□□□□□ -0.68
CCDC88A-204ENST00000413716 BTCP35070 178 aa10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 MPLKIPQ8TAP9 179 aa10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 HERV-K104P63124 156 aa10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 TIMM17AQ99595 171 aa10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 ZSWIM8A7E2V4 1837 aa10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 XCL1P47992 114 aa10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 ZCCHC24Q8N2G6 241 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 WFDC11Q8NEX6 87 aa10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 C12orf74Q32Q52 190 aa10.81□□□□□ -0.68
CCDC88A-204ENST00000413716 RFPL3SP0C7P2 107 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 ATP1A1-AS1Q5TC04 95 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 RPP25LQ8N5L8 163 aaKnown RBP10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 A0A0U1RQV1 116 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 IGLL5B9A064 214 aa10.8□□□□□ -0.68
CCDC88A-204ENST00000413716 H0YJW9 148 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms