RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 MT-CO2P00403 227 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 IGKV1-5P01602 117 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 APOC3P02656 99 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 RD3LP0DJH9 198 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 CBLN1P23435 193 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 OPRK1P41145 380 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 KCNIP4Q6PIL6 250 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 C19orf35Q6ZS72 473 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 SVBPQ8N300 66 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 LYPD6BQ8NI32 183 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 RCHY1Q96PM5 261 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 OPRPNQ99935 248 aaPredicted RBP4.68□□□□□ -1.66
USP40-202ENST00000409945 SMIM3Q9BZL3 60 aa4.68□□□□□ -1.66
USP40-202ENST00000409945 PRKDCP78527 4128 aaKnown RBP4.67□□□□□ -1.66
USP40-202ENST00000409945 DNAH3Q8TD57 4116 aa4.67□□□□□ -1.66
USP40-202ENST00000409945 SCO1O75880 301 aa4.67□□□□□ -1.66
USP40-202ENST00000409945 IFNA10P01566 189 aa4.67□□□□□ -1.66
USP40-202ENST00000409945 CMC4P56277 68 aaPredicted RBP4.67□□□□□ -1.66
USP40-202ENST00000409945 PAFAH1B2P68402 229 aa4.67□□□□□ -1.66
USP40-202ENST00000409945 TMEM252Q8N6L7 170 aa4.67□□□□□ -1.66
USP40-202ENST00000409945 GNPNAT1Q96EK6 184 aaPredicted RBP4.67□□□□□ -1.66
USP40-202ENST00000409945 IGHV3-21A0A0B4J1V1 117 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 IGSF23A1L1A6 192 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 FAM24AA6NFZ4 105 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 OR4C46A6NHA9 309 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 K7EMT4 169 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 TAS2R30P59541 319 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 DEFB114Q30KQ6 69 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 SPINK9Q5DT21 86 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 C10orf91Q5T1B1 145 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 FAM159AQ6UWV7 190 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 RNASEH2CQ8TDP1 164 aaKnown RBP4.66□□□□□ -1.66
USP40-202ENST00000409945 GPR146Q96CH1 333 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 CIB3Q96Q77 187 aaPredicted RBP4.66□□□□□ -1.66
USP40-202ENST00000409945 SEC11CQ9BY50 192 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 UQCC1Q9NVA1 299 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 CARHSP1Q9Y2V2 147 aaKnown RBP4.66□□□□□ -1.66
USP40-202ENST00000409945 U3KQK5 164 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 IGHV3-35A0A0C4DH35 117 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 F8W036 122 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 K7EIM0 57 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 SIVA1O15304 175 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 SYNGR2O43760 224 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 SNAPINO95295 136 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 P0C879 139 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 NPY1RP25929 384 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 S100A7P31151 101 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 SULT1A1P50225 295 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 HBG1P69891 147 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 HBG2P69892 147 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 BTN1A1Q13410 526 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 OR5C1Q8NGR4 320 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 ATP5SQ99766 215 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 VGLL1Q99990 258 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 PBDC1Q9BVG4 233 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 NKX6-2Q9C056 277 aaPredicted RBP4.66□□□□□ -1.66
USP40-202ENST00000409945 SMDT1Q9H4I9 107 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 WFDC1Q9HC57 220 aa4.66□□□□□ -1.66
USP40-202ENST00000409945 TMEM213A2RRL7 107 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 PCP4L1A6NKN8 68 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 OR11H12B2RN74 326 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 I3L2K1 104 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 IFNA5P01569 189 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 IFNA4P05014 189 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 RNASE2P10153 161 aaKnown RBP4.65□□□□□ -1.67
USP40-202ENST00000409945 TNFRSF9Q07011 255 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 CLINT1Q14677 625 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 PEA15Q15121 130 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 MRPL23Q16540 153 aaKnown RBP4.65□□□□□ -1.67
USP40-202ENST00000409945 C2orf83Q53S99 150 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 DPPA3Q6W0C5 159 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.65□□□□□ -1.67
USP40-202ENST00000409945 HSD17B11Q8NBQ5 300 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 OR1L4Q8NGR5 311 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 Q8WTZ3 238 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 METTL26Q96S19 204 aa4.65□□□□□ -1.67
USP40-202ENST00000409945 CSDC2Q9Y534 153 aaKnown RBP4.65□□□□□ -1.67
USP40-202ENST00000409945 A0A0G2JRQ6 117 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 DNASE2O00115 360 aaPredicted RBP4.64□□□□□ -1.67
USP40-202ENST00000409945 CST7O76096 145 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 TMEM50AO95807 157 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 CTSGP08311 255 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 C8orf88P0DMB2 117 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 NPPCP23582 126 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 ATP6V0CP27449 155 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 MFAP2P55001 183 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 RAB2AP61019 212 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 BOD1L2Q8IYS8 172 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 OR2G3Q8NGZ4 309 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 OR4X1Q8NH49 305 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 SLC35E1Q96K37 410 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 SH3BGRL3Q9H299 93 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 PSENENQ9NZ42 101 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 IGHV7-4-1A0A0J9YVY3 117 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 RPL37AP8A6NKH3 93 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 HBE1P02100 147 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 ADCYAP1P18509 176 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 AKR1C1Q04828 323 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 AKR1C8PQ5T2L2 129 aa4.64□□□□□ -1.67
USP40-202ENST00000409945 UNQ9165/PRO28630Q6UXU0 137 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms