RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-210ENST00000409694 CFHR1Q03591 330 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 MUSTN1Q8IVN3 82 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 VSIG2Q96IQ7 327 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 CRYGCP07315 174 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 ARMS2P0C7Q2 107 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 MED12Q93074 2177 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 IGLC2P0DOY2 106 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 IGLC3P0DOY3 106 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 PSMB8P28062 276 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 ATP1A1-AS1Q5TC04 95 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 SIP14410 1827 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 CLPSP04118 112 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 CD24P25063 80 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 Q6ZS49 121 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 SMKR1H3BMG3 65 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 SDHAF1A6NFY7 115 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 ZCCHC24Q8N2G6 241 aaKnown RBP6.38□□□□□ -1.39
SYNE1-210ENST00000409694 TMEM256Q8N2U0 113 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 A0A0B4J2C4 111 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 CELA3AP09093 270 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 ZNF672Q499Z4 452 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-210ENST00000409694 TIRAPP58753 221 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 YPEL3P61236 119 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-210ENST00000409694 VWA8A3KMH1 1905 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 SDK2Q58EX2 2172 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 TINCRA0A1B0GVN0 87 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 SMIM27A0A1W2PRY6 76 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 J3QQQ9 107 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 NDUFS6O75380 124 aaKnown RBP6.38□□□□□ -1.39
SYNE1-210ENST00000409694 BAALC-AS2P0C853 105 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 TMEM14CQ9P0S9 112 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 FNDC1Q4ZHG4 1894 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-210ENST00000409694 KIR2DL5BA0A0G2JN68 375 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 KIR2DL5BA0A0G2JPC4 375 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 KIR2DL5AQ8N109 375 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 THSD7AQ9UPZ6 1657 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 ANGP03950 147 aaKnown RBP6.38□□□□□ -1.39
SYNE1-210ENST00000409694 PDE6GP18545 87 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 ZNF664Q8N3J9 261 aa6.38□□□□□ -1.39
SYNE1-210ENST00000409694 KLF2Q9Y5W3 355 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-210ENST00000409694 C4orf51C9J302 202 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 DKK1O94907 266 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 NPYP01303 97 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 ETDBQ3ZM63 59 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 ZDBF2Q9HCK1 2354 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 ZNF503Q96F45 646 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 LYZL4Q96KX0 146 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 PAX9P55771 341 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 RPL18AQ02543 176 aaKnown RBP6.37□□□□□ -1.39
SYNE1-210ENST00000409694 FAM110DQ8TAY7 271 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-210ENST00000409694 SPTBN2O15020 2390 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 C11orf44Q8N8P7 122 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 POLR3KQ9Y2Y1 108 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-210ENST00000409694 C18orf32Q8TCD1 76 aa6.37□□□□□ -1.39
SYNE1-210ENST00000409694 RPP25LQ8N5L8 163 aaKnown RBP6.36□□□□□ -1.39
SYNE1-210ENST00000409694 SPANXB1Q9NS25 103 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-210ENST00000409694 J3QLI3 93 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 ZNF493Q6ZR52 646 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 JMJD7-PLA2G4BH0Y9G9 81 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 NDUFA4O00483 81 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 NREPQ16612 68 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 TIAF1O95411 115 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 FOXL2P58012 376 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 LHFPL1Q86WI0 220 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 FAM231DQ6ZW35 169 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 EIF4EBP2Q13542 120 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-210ENST00000409694 BRK1Q8WUW1 75 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 C5orf63A6NC05 138 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 J3QRE1 110 aa6.36□□□□□ -1.39
SYNE1-210ENST00000409694 PRB3Q04118 309 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-210ENST00000409694 DEFB125Q8N687 156 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 DEFB105AQ8NG35 78 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 V9GYY9 64 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 TCF20Q9UGU0 1960 aaKnown RBP6.35□□□□□ -1.39
SYNE1-210ENST00000409694 IGLV3-12A0A075B6K2 115 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 IGKV1D-43A0A0B4J1Z2 117 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 DEFB131AP59861 70 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 MRPL51Q4U2R6 128 aaKnown RBP6.35□□□□□ -1.39
SYNE1-210ENST00000409694 SPRR3Q9UBC9 169 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 ATP5EP56381 51 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-210ENST00000409694 MST1LQ2TV78 715 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 IGLV3-19P01714 112 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 HIGD2BQ4VC39 106 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 C8orf49Q96NF6 230 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 NXPH4O95158 308 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 C9orf47Q6ZRZ4 202 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 OPRPNQ99935 248 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-210ENST00000409694 TMEM14BQ9NUH8 114 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 RBAKDNA6NC62 111 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 IGKV1-5P01602 117 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 SAA4P35542 130 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 ZNRF2Q8NHG8 242 aa6.35□□□□□ -1.39
SYNE1-210ENST00000409694 TRIOBPQ9H2D6 2365 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 C8orf86Q6ZUL3 223 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 CNOT1A5YKK6 2376 aaKnown RBP6.34□□□□□ -1.39
SYNE1-210ENST00000409694 UBE2E1P51965 193 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 GAFA1Q96PS6 74 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 CXCL5P42830 114 aa6.34□□□□□ -1.39
SYNE1-210ENST00000409694 MRPL53Q96EL3 112 aaKnown RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms