RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 C12orf57Q99622 126 aa14.44□□□□□ -0.1
USP39-202ENST00000409025 SH2D1AO60880 128 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 APCSP02743 223 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 SMIM6P0DI80 62 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 GZMBP10144 247 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 CRISP2P16562 243 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 RPL11P62913 178 aaKnown RBP14.43□□□□□ -0.1
USP39-202ENST00000409025 A0A1B0GXF2 115 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 FABP4P15090 132 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 BMI1P35226 326 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 FOXA3P55318 350 aaPredicted RBP14.43□□□□□ -0.1
USP39-202ENST00000409025 HBBP68871 147 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 NRN1Q9NPD7 142 aa14.43□□□□□ -0.1
USP39-202ENST00000409025 GRIFINA4D1Z8 144 aa14.42□□□□□ -0.1
USP39-202ENST00000409025 TMEM189A5PLL7 270 aa14.42□□□□□ -0.1
USP39-202ENST00000409025 CAMPP49913 170 aa14.42□□□□□ -0.1
USP39-202ENST00000409025 TMEM78Q5T7P6 136 aa14.42□□□□□ -0.1
USP39-202ENST00000409025 PDZD2O15018 2839 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 DNAJC9-AS1A6NH13 148 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 SOCS3O14543 225 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 ZNF738Q8NE65 137 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 OR10D4PQ8NGN7 298 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 HIST1H2BLQ99880 126 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 AGPAT4-IT1Q9H0P7 198 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 KIAA1644Q3SXP7 199 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 GDF5OSQ5U4N7 250 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 C9orf47Q6ZRZ4 202 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 KLHDC1Q8N7A1 406 aa14.41□□□□□ -0.1
USP39-202ENST00000409025 ZNF138P52744 262 aa14.4□□□□□ -0.1
USP39-202ENST00000409025 Q6AWC8 147 aa14.4□□□□□ -0.1
USP39-202ENST00000409025 C20orf173Q96LM9 149 aa14.4□□□□□ -0.1
USP39-202ENST00000409025 IGHV4OR15-8A0A075B7B6 117 aa14.39□□□□□ -0.11
USP39-202ENST00000409025 A0A087WW49 117 aa14.39□□□□□ -0.11
USP39-202ENST00000409025 FAM181BA6NEQ2 426 aa14.39□□□□□ -0.11
USP39-202ENST00000409025 ZNF80P51504 273 aaPredicted RBP14.39□□□□□ -0.11
USP39-202ENST00000409025 SLAQ13239 276 aa14.39□□□□□ -0.11
USP39-202ENST00000409025 REC114Q7Z4M0 266 aa14.39□□□□□ -0.11
USP39-202ENST00000409025 A8MWP6 167 aa14.39□□□□□ -0.11
USP39-202ENST00000409025 RPS20P60866 119 aaKnown RBP14.39□□□□□ -0.11
USP39-202ENST00000409025 Q0VG73 95 aa14.39□□□□□ -0.11
USP39-202ENST00000409025 PACRGQ96M98 296 aaPredicted RBP14.39□□□□□ -0.11
USP39-202ENST00000409025 A0A1B0GUS0 222 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 TMEM213A2RRL7 107 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 FABP5P3A8MUU1 101 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 HAX1O00165 279 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 LGALS9O00182 355 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 OVOL1O14753 267 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 AMBPP02760 352 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 EDN2P20800 178 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 TMEM256Q8N2U0 113 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 PPP1R14DQ9NXH3 145 aa14.38□□□□□ -0.11
USP39-202ENST00000409025 IGKV3-7A0A075B6H7 116 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 A0A1B0GUT8 65 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 SRIP30626 198 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 SRSF2Q01130 221 aaKnown RBP14.37□□□□□ -0.11
USP39-202ENST00000409025 SCGB2A2Q13296 93 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 Q6ZSV7 163 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 BAGE3Q86Y29 109 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 TMEM18Q96B42 140 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 SSBP4Q9BWG4 385 aaPredicted RBP14.37□□□□□ -0.11
USP39-202ENST00000409025 CCDC168Q8NDH2 2452 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 TMSB15BA0A087X1C1 80 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 HOXD3P31249 432 aaPredicted RBP14.37□□□□□ -0.11
USP39-202ENST00000409025 SYNJ2BPP57105 145 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 RIGQ13278 110 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 OR10J3Q5JRS4 329 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 SAMD13Q5VXD3 122 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 BORCS7Q96B45 105 aa14.37□□□□□ -0.11
USP39-202ENST00000409025 OR10J6PQ8NGY7 276 aa14.36□□□□□ -0.11
USP39-202ENST00000409025 TP53TG3Q9ULZ0 132 aa14.36□□□□□ -0.11
USP39-202ENST00000409025 ZNF469Q96JG9 3925 aaPredicted RBP14.36□□□□□ -0.11
USP39-202ENST00000409025 LINC00477Q96M19 166 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 TPPP3Q9BW30 176 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 ESM1Q9NQ30 184 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 LENEPQ9Y5L5 61 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 MXRA5Q9NR99 2828 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 A0A1B0GW15 77 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 ORM1P02763 201 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 ARMS2P0C7Q2 107 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 ID1P41134 155 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 SELENOKQ9Y6D0 94 aa14.35□□□□□ -0.11
USP39-202ENST00000409025 FLNAP21333 2647 aaKnown RBP14.34□□□□□ -0.11
USP39-202ENST00000409025 SRD5A1P18405 259 aa14.34□□□□□ -0.11
USP39-202ENST00000409025 HIST1H1AQ02539 215 aaPredicted RBP14.34□□□□□ -0.11
USP39-202ENST00000409025 NUPR1O60356 82 aa14.33□□□□□ -0.11
USP39-202ENST00000409025 SERF1AO75920 110 aa14.33□□□□□ -0.11
USP39-202ENST00000409025 ZNF705DP0CH99 300 aaPredicted RBP14.33□□□□□ -0.11
USP39-202ENST00000409025 ZNF705BP0CI00 300 aaPredicted RBP14.33□□□□□ -0.11
USP39-202ENST00000409025 ESDP10768 282 aa14.33□□□□□ -0.12
USP39-202ENST00000409025 PYY3Q5JQD4 70 aa14.33□□□□□ -0.12
USP39-202ENST00000409025 LYZL1Q6UWQ5 148 aa14.33□□□□□ -0.12
USP39-202ENST00000409025 C4orf3Q8WVX3 66 aa14.33□□□□□ -0.12
USP39-202ENST00000409025 TMEM160Q9NX00 188 aa14.33□□□□□ -0.12
USP39-202ENST00000409025 F2Z2F3 143 aa14.32□□□□□ -0.12
USP39-202ENST00000409025 KLF5Q13887 457 aaPredicted RBP14.32□□□□□ -0.12
USP39-202ENST00000409025 LINC01559Q495D7 138 aa14.32□□□□□ -0.12
USP39-202ENST00000409025 KHDC1LQ5JSQ8 128 aa14.32□□□□□ -0.12
USP39-202ENST00000409025 C18orf65Q6ZTR6 163 aa14.32□□□□□ -0.12
USP39-202ENST00000409025 DCANP1Q8TF63 244 aa14.32□□□□□ -0.12
USP39-202ENST00000409025 LINC01619G3V211 115 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms