RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 CLUHP3Q96NS8 147 aa11.35□□□□□ -0.59
CUX2-202ENST00000397643 PAXXQ9BUH6 204 aa11.35□□□□□ -0.59
CUX2-202ENST00000397643 OR51M1Q9H341 326 aa11.35□□□□□ -0.59
CUX2-202ENST00000397643 SAV1Q9H4B6 383 aaPredicted RBP11.35□□□□□ -0.59
CUX2-202ENST00000397643 YTHDF2Q9Y5A9 579 aaKnown RBP11.35□□□□□ -0.59
CUX2-202ENST00000397643 A0A087X0K7 114 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 MRPS12O15235 138 aaKnown RBP11.34□□□□□ -0.59
CUX2-202ENST00000397643 HIST1H1EP10412 219 aaKnown RBP11.34□□□□□ -0.59
CUX2-202ENST00000397643 SULT1A2P50226 295 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 GUK1Q16774 197 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 PQLC2Q6ZP29 291 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 C1orf158Q8N1D5 194 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 ZNRF2Q8NHG8 242 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 FAM213BQ8TBF2 198 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 LRRC20Q8TCA0 184 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 SLC35B3Q9H1N7 401 aa11.34□□□□□ -0.59
CUX2-202ENST00000397643 NBDYA0A0U1RRE5 68 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 HMGB3O15347 200 aaKnown RBP11.33□□□□□ -0.6
CUX2-202ENST00000397643 EIF3GO75821 320 aaKnown RBP eCLIP11.33□□□□□ -0.6
CUX2-202ENST00000397643 STAG3L2P0CL84 134 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 STAG3L3P0CL85 134 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 PYYP10082 97 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 ID1P41134 155 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 FOXI2Q6ZQN5 318 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 C6orf223Q8N319 242 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 RNF141Q8WVD5 230 aa11.33□□□□□ -0.6
CUX2-202ENST00000397643 LOC102723971A0A1B0GUV8 181 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 SOCS3O14543 225 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 CXorf1O96002 111 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 IGLC2P0DOY2 106 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 FHITP49789 147 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 UBE2L3P68036 154 aaKnown RBP11.32□□□□□ -0.6
CUX2-202ENST00000397643 ZNF726P1Q15940 193 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 LCN15Q6UWW0 184 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 ALKAL2Q6UX46 152 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 C15orf53Q8NAA6 179 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 C16orf92Q96LL3 132 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 SCRT2Q9NQ03 307 aa11.32□□□□□ -0.6
CUX2-202ENST00000397643 MAP1LC3B2A6NCE7 125 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 H3BQ15 152 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 SNRPCP09234 159 aaKnown RBP11.31□□□□□ -0.6
CUX2-202ENST00000397643 OR10J4P0C629 311 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 NBEAP1P0C6P0 100 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 ARL14EPLP0DKL9 152 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 FAM74A1Q5RGS3 127 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 SSX7Q7RTT5 188 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 FXYD5Q96DB9 178 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 ZNF503Q96F45 646 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 MAP1LC3BQ9GZQ8 125 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 ZNF586Q9NXT0 402 aa11.31□□□□□ -0.6
CUX2-202ENST00000397643 DMBT1Q9UGM3 2413 aaPredicted RBP11.31□□□□□ -0.6
CUX2-202ENST00000397643 TRBV19A0A075B6N1 114 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 H3BTX0 84 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 ISLRO14498 428 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 ZNF253O75346 499 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 HBE1P02100 147 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 H2AFB1P0C5Y9 115 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 GCHFRP30047 84 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 PSMB3P49720 205 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 DAD1P61803 113 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 PDE6HQ13956 83 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 IQCF2Q8IXL9 164 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 SFT2D1Q8WV19 159 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 BLNKQ8WV28 456 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 MBD3L1Q8WWY6 194 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 C17orf77Q96MU5 243 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 SLC50A1Q9BRV3 221 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 TMEM167BQ9NRX6 74 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 GOLT1BQ9Y3E0 138 aa11.3□□□□□ -0.6
CUX2-202ENST00000397643 F6UB75 175 aa11.29□□□□□ -0.6
CUX2-202ENST00000397643 TEX46H3BTG2 121 aa11.29□□□□□ -0.6
CUX2-202ENST00000397643 IFNA7P01567 189 aa11.29□□□□□ -0.6
CUX2-202ENST00000397643 PSG9Q00887 426 aa11.29□□□□□ -0.6
CUX2-202ENST00000397643 RRN3P1Q2M238 152 aa11.29□□□□□ -0.6
CUX2-202ENST00000397643 TEX261Q6UWH6 196 aa11.29□□□□□ -0.6
CUX2-202ENST00000397643 OR4B1Q8NGF8 309 aa11.29□□□□□ -0.6
CUX2-202ENST00000397643 SAT2Q96F10 170 aaPredicted RBP11.29□□□□□ -0.6
CUX2-202ENST00000397643 LINC00052Q96N35 136 aa11.29□□□□□ -0.6
CUX2-202ENST00000397643 FGF8P55075 233 aaPredicted RBP11.28□□□□□ -0.6
CUX2-202ENST00000397643 BLOC1S1P78537 153 aa11.28□□□□□ -0.6
CUX2-202ENST00000397643 SPATA12Q7Z6I5 190 aa11.28□□□□□ -0.6
CUX2-202ENST00000397643 ZNF680Q8NEM1 530 aa11.28□□□□□ -0.6
CUX2-202ENST00000397643 ATG101Q9BSB4 218 aa11.28□□□□□ -0.6
CUX2-202ENST00000397643 ZNF331Q9NQX6 463 aaPredicted RBP11.28□□□□□ -0.6
CUX2-202ENST00000397643 TRAV8-2A0A0B4J237 113 aa11.27□□□□□ -0.61
CUX2-202ENST00000397643 A8MTW9 85 aa11.27□□□□□ -0.61
CUX2-202ENST00000397643 LYPD1Q8N2G4 141 aa11.27□□□□□ -0.61
CUX2-202ENST00000397643 SUN5Q8TC36 379 aa11.27□□□□□ -0.61
CUX2-202ENST00000397643 AAMDCQ9H7C9 122 aa11.27□□□□□ -0.61
CUX2-202ENST00000397643 FAT1Q14517 4588 aa11.27□□□□□ -0.61
CUX2-202ENST00000397643 TRAV1-1A0A0B4J248 108 aa11.26□□□□□ -0.61
CUX2-202ENST00000397643 A0A0J9YX75 114 aa11.26□□□□□ -0.61
CUX2-202ENST00000397643 SLC17A3O00476 420 aa11.26□□□□□ -0.61
CUX2-202ENST00000397643 NDUFB4O95168 129 aa11.26□□□□□ -0.61
CUX2-202ENST00000397643 PRM2P04554 102 aa11.26□□□□□ -0.61
CUX2-202ENST00000397643 RANP62826 216 aaKnown RBP11.26□□□□□ -0.61
CUX2-202ENST00000397643 IGFL4Q6B9Z1 124 aa11.26□□□□□ -0.61
CUX2-202ENST00000397643 AMTNQ6UX39 209 aa11.26□□□□□ -0.61
CUX2-202ENST00000397643 PRELID1Q9Y255 219 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms