RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 VGLL1Q99990 258 aa16.84■□□□□ 0.29
SHMT1-204ENST00000395682 PLAC8L1A1L4L8 177 aa16.83■□□□□ 0.28
SHMT1-204ENST00000395682 RNF222A6NCQ9 220 aa16.83■□□□□ 0.28
SHMT1-204ENST00000395682 LYRM9A8MSI8 78 aa16.83■□□□□ 0.28
SHMT1-204ENST00000395682 ZNF493Q6ZR52 646 aa16.83■□□□□ 0.28
SHMT1-204ENST00000395682 OR2G3Q8NGZ4 309 aa16.83■□□□□ 0.28
SHMT1-204ENST00000395682 C16orf74Q96GX8 76 aa16.83■□□□□ 0.28
SHMT1-204ENST00000395682 PSMG3Q9BT73 122 aaPredicted RBP16.83■□□□□ 0.28
SHMT1-204ENST00000395682 Q9H3A6 140 aa16.83■□□□□ 0.28
SHMT1-204ENST00000395682 SLC25A5P05141 298 aaKnown RBP16.82■□□□□ 0.28
SHMT1-204ENST00000395682 HTN3P15516 51 aa16.82■□□□□ 0.28
SHMT1-204ENST00000395682 CSN1S1P47710 185 aa16.82■□□□□ 0.28
SHMT1-204ENST00000395682 TMEM78Q5T7P6 136 aa16.82■□□□□ 0.28
SHMT1-204ENST00000395682 FAM19A4Q96LR4 140 aa16.82■□□□□ 0.28
SHMT1-204ENST00000395682 G3V3Q6 166 aa16.81■□□□□ 0.28
SHMT1-204ENST00000395682 HMGB3O15347 200 aaKnown RBP16.81■□□□□ 0.28
SHMT1-204ENST00000395682 RPL7L1Q6DKI1 246 aaKnown RBP16.81■□□□□ 0.28
SHMT1-204ENST00000395682 PQLC2Q6ZP29 291 aa16.81■□□□□ 0.28
SHMT1-204ENST00000395682 DEFB130BP0DP73 79 aa16.8■□□□□ 0.28
SHMT1-204ENST00000395682 DEFB130AP0DP74 79 aa16.8■□□□□ 0.28
SHMT1-204ENST00000395682 RNASE4P34096 147 aaKnown RBP16.8■□□□□ 0.28
SHMT1-204ENST00000395682 SERF2P84101 59 aa16.8■□□□□ 0.28
SHMT1-204ENST00000395682 CCDC28AQ8IWP9 274 aa16.8■□□□□ 0.28
SHMT1-204ENST00000395682 TMEM263Q8WUH6 116 aaKnown RBP16.8■□□□□ 0.28
SHMT1-204ENST00000395682 NDUFAF3Q9BU61 184 aa16.8■□□□□ 0.28
SHMT1-204ENST00000395682 SH3BGRL3Q9H299 93 aa16.8■□□□□ 0.28
SHMT1-204ENST00000395682 BORCS7-ASMTA0A0B4J1R7 106 aa16.79■□□□□ 0.28
SHMT1-204ENST00000395682 C7orf71A4D174 169 aa16.79■□□□□ 0.28
SHMT1-204ENST00000395682 KLLNB2CW77 178 aa16.79■□□□□ 0.28
SHMT1-204ENST00000395682 MBP02144 154 aa16.79■□□□□ 0.28
SHMT1-204ENST00000395682 GPX1P07203 203 aa16.79■□□□□ 0.28
SHMT1-204ENST00000395682 CDC34P49427 236 aaPredicted RBP16.79■□□□□ 0.28
SHMT1-204ENST00000395682 CD300CQ08708 224 aa16.79■□□□□ 0.28
SHMT1-204ENST00000395682 RNASE8Q8TDE3 154 aaKnown RBP16.79■□□□□ 0.28
SHMT1-204ENST00000395682 OTORQ9NRC9 128 aa16.79■□□□□ 0.28
SHMT1-204ENST00000395682 ZNF492Q9P255 531 aa16.79■□□□□ 0.28
SHMT1-204ENST00000395682 TIMM8BQ9Y5J9 83 aaPredicted RBP16.79■□□□□ 0.28
SHMT1-204ENST00000395682 PGPA6NDG6 321 aa16.78■□□□□ 0.28
SHMT1-204ENST00000395682 NMBP08949 121 aa16.78■□□□□ 0.28
SHMT1-204ENST00000395682 CRISP2P16562 243 aa16.78■□□□□ 0.28
SHMT1-204ENST00000395682 ZNF138P52744 262 aa16.78■□□□□ 0.28
SHMT1-204ENST00000395682 RXFP4Q8TDU9 374 aa16.78■□□□□ 0.28
SHMT1-204ENST00000395682 RAB24Q969Q5 203 aa16.78■□□□□ 0.28
SHMT1-204ENST00000395682 GNPNAT1Q96EK6 184 aaPredicted RBP16.78■□□□□ 0.28
SHMT1-204ENST00000395682 HYLS1Q96M11 299 aa16.78■□□□□ 0.28
SHMT1-204ENST00000395682 SMLR1H3BR10 107 aa16.77■□□□□ 0.28
SHMT1-204ENST00000395682 ZNF324O75467 553 aaPredicted RBP16.77■□□□□ 0.28
SHMT1-204ENST00000395682 BTN1A1Q13410 526 aa16.77■□□□□ 0.28
SHMT1-204ENST00000395682 FAM210BQ96KR6 192 aa16.77■□□□□ 0.28
SHMT1-204ENST00000395682 PYGO2Q9BRQ0 406 aa16.77■□□□□ 0.28
SHMT1-204ENST00000395682 NOP10Q9NPE3 64 aaKnown RBP16.77■□□□□ 0.28
SHMT1-204ENST00000395682 RBAKDNA6NC62 111 aa16.76■□□□□ 0.27
SHMT1-204ENST00000395682 DIRC3C9JPN6 131 aa16.76■□□□□ 0.27
SHMT1-204ENST00000395682 ARPC5O15511 151 aa16.76■□□□□ 0.27
SHMT1-204ENST00000395682 STAG3L2P0CL84 134 aa16.76■□□□□ 0.27
SHMT1-204ENST00000395682 STAG3L3P0CL85 134 aa16.76■□□□□ 0.27
SHMT1-204ENST00000395682 ARL14EPLP0DKL9 152 aa16.76■□□□□ 0.27
SHMT1-204ENST00000395682 ZFAND2AQ8N6M9 145 aa16.76■□□□□ 0.27
SHMT1-204ENST00000395682 FAM74A1Q5RGS3 127 aa16.75■□□□□ 0.27
SHMT1-204ENST00000395682 Q8TAT8 98 aa16.75■□□□□ 0.27
SHMT1-204ENST00000395682 CMTM2Q8TAZ6 248 aa16.75■□□□□ 0.27
SHMT1-204ENST00000395682 ACTR3CQ9C0K3 210 aaPredicted RBP16.74■□□□□ 0.27
SHMT1-204ENST00000395682 VPS13DQ5THJ4 4388 aa16.73■□□□□ 0.27
SHMT1-204ENST00000395682 TRBV7-9A0A0J9YWB2 115 aa16.73■□□□□ 0.27
SHMT1-204ENST00000395682 CBY3A6NI87 242 aa16.73■□□□□ 0.27
SHMT1-204ENST00000395682 TAAR5O14804 337 aa16.73■□□□□ 0.27
SHMT1-204ENST00000395682 PRR9Q5T870 116 aa16.73■□□□□ 0.27
SHMT1-204ENST00000395682 RPH3ALQ9UNE2 315 aa16.73■□□□□ 0.27
SHMT1-204ENST00000395682 SNURFLB1AK76 121 aa16.72■□□□□ 0.27
SHMT1-204ENST00000395682 GCHFRP30047 84 aa16.72■□□□□ 0.27
SHMT1-204ENST00000395682 TMEM88Q6PEY1 159 aa16.72■□□□□ 0.27
SHMT1-204ENST00000395682 LINC00467Q9BRT7 94 aa16.72■□□□□ 0.27
SHMT1-204ENST00000395682 Q6ZQT7 251 aa16.71■□□□□ 0.27
SHMT1-204ENST00000395682 EIF4E3Q8N5X7 224 aaKnown RBP16.71■□□□□ 0.27
SHMT1-204ENST00000395682 CYTL1Q9NRR1 136 aa16.71■□□□□ 0.27
SHMT1-204ENST00000395682 F5H768 121 aa16.7■□□□□ 0.26
SHMT1-204ENST00000395682 CXorf1O96002 111 aa16.7■□□□□ 0.26
SHMT1-204ENST00000395682 ATP5G1P05496 136 aa16.7■□□□□ 0.26
SHMT1-204ENST00000395682 ATP5G3P48201 142 aa16.7■□□□□ 0.26
SHMT1-204ENST00000395682 ARL6IP6Q8N6S5 226 aa16.7■□□□□ 0.26
SHMT1-204ENST00000395682 SUN5Q8TC36 379 aa16.7■□□□□ 0.26
SHMT1-204ENST00000395682 KMT2AQ03164 3969 aa16.7■□□□□ 0.26
SHMT1-204ENST00000395682 RGS13O14921 159 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 P0DMU3 169 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 FAM231AP0DMU4 169 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 FAM231CP0DMU5 169 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 ANXA2RQ3ZCQ2 193 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 GOLT1AQ6ZVE7 132 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 SSX7Q7RTT5 188 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 ST6GAL2Q96JF0 529 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 GSN-AS1Q9NRJ2 163 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 LENEPQ9Y5L5 61 aa16.69■□□□□ 0.26
SHMT1-204ENST00000395682 GNG5P63218 68 aa16.68■□□□□ 0.26
SHMT1-204ENST00000395682 DAZ2Q13117 558 aaKnown RBP16.68■□□□□ 0.26
SHMT1-204ENST00000395682 LINC00612Q8N6U2 182 aa16.68■□□□□ 0.26
SHMT1-204ENST00000395682 ZNF680Q8NEM1 530 aa16.68■□□□□ 0.26
SHMT1-204ENST00000395682 TMED6Q8WW62 240 aa16.68■□□□□ 0.26
SHMT1-204ENST00000395682 TMEM167BQ9NRX6 74 aa16.68■□□□□ 0.26
SHMT1-204ENST00000395682 IGHV1OR15-1A0A075B7D0 117 aa16.67■□□□□ 0.26
SHMT1-204ENST00000395682 GAGE12BA1L429 117 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms