RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 OR10J3Q5JRS4 329 aa11.54□□□□□ -0.56
GPC3-202ENST00000394299 C8orf86Q6ZUL3 223 aa11.54□□□□□ -0.56
GPC3-202ENST00000394299 Q96MF0 132 aa11.54□□□□□ -0.56
GPC3-202ENST00000394299 A0A087X0K7 114 aa11.53□□□□□ -0.56
GPC3-202ENST00000394299 IGLV1-40P01703 118 aa11.53□□□□□ -0.56
GPC3-202ENST00000394299 DDTP30046 118 aa11.53□□□□□ -0.56
GPC3-202ENST00000394299 DEFB1P60022 68 aa11.53□□□□□ -0.56
GPC3-202ENST00000394299 IGKV3-7A0A075B6H7 116 aa11.53□□□□□ -0.56
GPC3-202ENST00000394299 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.53□□□□□ -0.56
GPC3-202ENST00000394299 GPX1P07203 203 aa11.53□□□□□ -0.56
GPC3-202ENST00000394299 ZNF664Q8N3J9 261 aa11.53□□□□□ -0.56
GPC3-202ENST00000394299 DUX5Q96PT3 197 aa11.53□□□□□ -0.56
GPC3-202ENST00000394299 CCDC168Q8NDH2 2452 aa11.52□□□□□ -0.56
GPC3-202ENST00000394299 CFHR3Q02985 330 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 ZNF575Q86XF7 245 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 S100A7P31151 101 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 PAFAH1B2P68402 229 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 TM4SF20Q53R12 229 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 C1orf194Q5T5A4 169 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 Q6ZQT7 251 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 IL17RELQ6ZVW7 336 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 USMG5Q96IX5 58 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 AGPAT4-IT1Q9H0P7 198 aa11.52□□□□□ -0.57
GPC3-202ENST00000394299 BEX4Q9NWD9 120 aaPredicted RBP11.52□□□□□ -0.57
GPC3-202ENST00000394299 SERTM2A0A1B0GWG4 89 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 TMEM189A5PLL7 270 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 FAM231BA6NCW3 169 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 NTF3P20783 257 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 AMTP48728 403 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 SAPCD1Q5SSQ6 148 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 FAM162BQ5T6X4 162 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 GLMPQ8WWB7 406 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 C20orf173Q96LM9 149 aa11.51□□□□□ -0.57
GPC3-202ENST00000394299 HAX1O00165 279 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 PKIAP61925 76 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 TDRG1Q3Y452 100 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 LYZL1Q6UWQ5 148 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 GPHB5Q86YW7 130 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 KRTAP1-3Q8IUG1 177 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 SIGLECL1Q8N7X8 197 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 KCNS1Q96KK3 526 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 CUBNO60494 3623 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 A0A1B0GUT8 65 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 J3QLI3 93 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 NDUFA4O00483 81 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 SONP18583 2426 aaKnown RBP11.5□□□□□ -0.57
GPC3-202ENST00000394299 URB1-AS1Q96HZ7 61 aa11.5□□□□□ -0.57
GPC3-202ENST00000394299 TMEM213A2RRL7 107 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 SRD5A1P18405 259 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 ZNF138P52744 262 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 C16orf92Q96LL3 132 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 SLC50A1Q9BRV3 221 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 NRN1Q9NPD7 142 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 NAGKQ9UJ70 344 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 H3BUA1 57 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 RPL11P62913 178 aaKnown RBP11.49□□□□□ -0.57
GPC3-202ENST00000394299 C2orf88Q9BSF0 95 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 NPFFR1Q9GZQ6 430 aa11.49□□□□□ -0.57
GPC3-202ENST00000394299 HOXA3O43365 443 aaPredicted RBP11.48□□□□□ -0.57
GPC3-202ENST00000394299 ZNF324O75467 553 aaPredicted RBP11.48□□□□□ -0.57
GPC3-202ENST00000394299 PMCHL1Q16048 86 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 DNLZQ5SXM8 178 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 RNASEKQ6P5S7 137 aaKnown RBP11.48□□□□□ -0.57
GPC3-202ENST00000394299 NIT1Q86X76 327 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 TMEM190Q8WZ59 177 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 ITPR3Q14573 2671 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 LOC102724200A0A096LPH7 203 aaPredicted RBP11.48□□□□□ -0.57
GPC3-202ENST00000394299 FSHBP01225 129 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 ORM1P02763 201 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 KRTDAPP60985 99 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 KLF5Q13887 457 aaPredicted RBP11.48□□□□□ -0.57
GPC3-202ENST00000394299 COX8CQ7Z4L0 72 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 ARL6IP6Q8N6S5 226 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 ATP6V0BQ99437 205 aa11.48□□□□□ -0.57
GPC3-202ENST00000394299 BRI3O95415 125 aa11.47□□□□□ -0.57
GPC3-202ENST00000394299 PSMB8P28062 276 aa11.47□□□□□ -0.57
GPC3-202ENST00000394299 A0A0G2JLM5 398 aa11.47□□□□□ -0.57
GPC3-202ENST00000394299 TSTD3H0UI37 97 aa11.47□□□□□ -0.57
GPC3-202ENST00000394299 J3KRW8 73 aa11.47□□□□□ -0.57
GPC3-202ENST00000394299 RPLP1P05386 114 aaKnown RBP11.47□□□□□ -0.57
GPC3-202ENST00000394299 Q6YL49 198 aa11.47□□□□□ -0.57
GPC3-202ENST00000394299 WFDC11Q8NEX6 87 aa11.47□□□□□ -0.57
GPC3-202ENST00000394299 C11orf21Q9P2W6 132 aa11.47□□□□□ -0.57
GPC3-202ENST00000394299 TCAPO15273 167 aa11.46□□□□□ -0.57
GPC3-202ENST00000394299 RIGQ13278 110 aa11.46□□□□□ -0.57
GPC3-202ENST00000394299 RHPN1-AS1Q9BWJ2 59 aa11.46□□□□□ -0.57
GPC3-202ENST00000394299 PEF1Q9UBV8 284 aaKnown RBP11.46□□□□□ -0.57
GPC3-202ENST00000394299 CSN3P07498 182 aa11.46□□□□□ -0.58
GPC3-202ENST00000394299 HIST2H2BDQ6DRA6 164 aa11.46□□□□□ -0.58
GPC3-202ENST00000394299 PSMG3-AS1Q96PY0 264 aa11.46□□□□□ -0.58
GPC3-202ENST00000394299 MSRB1Q9NZV6 116 aa11.46□□□□□ -0.58
GPC3-202ENST00000394299 VPREB3Q9UKI3 123 aa11.46□□□□□ -0.58
GPC3-202ENST00000394299 HELZ2Q9BYK8 2649 aaKnown RBP11.45□□□□□ -0.58
GPC3-202ENST00000394299 FABP5P3A8MUU1 101 aa11.45□□□□□ -0.58
GPC3-202ENST00000394299 F6UB75 175 aa11.45□□□□□ -0.58
GPC3-202ENST00000394299 HSBP1O75506 76 aa11.45□□□□□ -0.58
GPC3-202ENST00000394299 CYB5R2Q6BCY4 276 aa11.45□□□□□ -0.58
GPC3-202ENST00000394299 NDFIP1Q9BT67 221 aa11.45□□□□□ -0.58
GPC3-202ENST00000394299 BMI1P35226 326 aa11.45□□□□□ -0.58
GPC3-202ENST00000394299 LRRC75A-AS1Q8N1F1 130 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms