RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 OR4C46A6NHA9 309 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 I3L2K1 104 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 PEX7O00628 323 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 MYCNOSP40205 109 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 SEC11AP67812 179 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 SLAQ13239 276 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 EBI3Q14213 229 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 MUC21Q5SSG8 566 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 FER1L6-AS1Q8NA97 138 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 SCRT2Q9NQ03 307 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 IGHV3-21A0A0B4J1V1 117 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 PSG3Q16557 428 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 CCDC144NLQ6NUI1 221 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 SPATA12Q7Z6I5 190 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 Q8N6K4 173 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 SH2D7A6NKC9 451 aaPredicted RBP11.13□□□□□ -0.63
HMGA1-203ENST00000374116 IBA57Q5T440 356 aaKnown RBP11.13□□□□□ -0.63
HMGA1-203ENST00000374116 RNASE7Q9H1E1 156 aaKnown RBP11.13□□□□□ -0.63
HMGA1-203ENST00000374116 VPREB3Q9UKI3 123 aa11.13□□□□□ -0.63
HMGA1-203ENST00000374116 HIGD1AQ9Y241 93 aa11.13□□□□□ -0.63
HMGA1-203ENST00000374116 ATRQ13535 2644 aa11.13□□□□□ -0.63
HMGA1-203ENST00000374116 TRAV8-6A0A0B4J262 113 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 SMIM17P0DL12 118 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 MGST1P10620 155 aaKnown RBP11.12□□□□□ -0.63
HMGA1-203ENST00000374116 GTF2H5Q6ZYL4 71 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 ATP5L2Q7Z4Y8 100 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 CHCHD1Q96BP2 118 aaKnown RBP11.12□□□□□ -0.63
HMGA1-203ENST00000374116 TMEM191AQ9H0A3 160 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 SYS1-DBNDD2H3BUS1 97 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 GP9P14770 177 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 FXYD3Q14802 87 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 C5orf64Q2M2E5 130 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 NEGR1Q7Z3B1 354 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 RASL11BQ9BPW5 248 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 SMPXQ9UHP9 88 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 EPDR1Q9UM22 224 aa11.12□□□□□ -0.63
HMGA1-203ENST00000374116 LINC00479Q96M42 142 aa11.11□□□□□ -0.63
HMGA1-203ENST00000374116 PGPA6NDG6 321 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 A6NDX4 124 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 K7EIM0 57 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 SLC25A5P05141 298 aaKnown RBP11.1□□□□□ -0.63
HMGA1-203ENST00000374116 OR5AL1P0C617 328 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 S100A7P31151 101 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 LYZP61626 148 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 Q6ZS46 218 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 BLNKQ8WV28 456 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 URB1-AS1Q96HZ7 61 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 CHRDL1Q9BU40 450 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 TMEM14CQ9P0S9 112 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 KLF12Q9Y4X4 402 aa11.1□□□□□ -0.63
HMGA1-203ENST00000374116 A0A1B0GXF2 115 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 SPINK4O60575 86 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 SAP30O75446 220 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 RNASE1P07998 156 aaKnown RBP11.09□□□□□ -0.63
HMGA1-203ENST00000374116 FAM106CPP0CH98 169 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 TCL1AP56279 114 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 BLCAPP62952 87 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 ZNF562Q6V9R5 426 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 TMEM190Q8WZ59 177 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 GRAMD2BQ96HH9 432 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 JMJD8Q96S16 334 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 SERTAD4Q9NUC0 356 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 GAGE10A6NGK3 116 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 NCBP2LA6PVI3 153 aaKnown RBP11.09□□□□□ -0.63
HMGA1-203ENST00000374116 NPIPB5A8MRT5 1133 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 K7EP34 96 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 IGKV1-17P01599 117 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 KRTAP24-1Q3LI83 254 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 GDF5OSQ5U4N7 250 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 RNASEKQ6P5S7 137 aaKnown RBP11.09□□□□□ -0.63
HMGA1-203ENST00000374116 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.09□□□□□ -0.63
HMGA1-203ENST00000374116 C5orf17Q8NAS9 161 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 NHLRC2Q8NBF2 726 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 DPF1Q92782 380 aa11.09□□□□□ -0.63
HMGA1-203ENST00000374116 SLC25A39Q9BZJ4 359 aaPredicted RBP11.09□□□□□ -0.63
HMGA1-203ENST00000374116 H3BRM9 83 aa11.08□□□□□ -0.64
HMGA1-203ENST00000374116 GPR183P32249 361 aa11.08□□□□□ -0.64
HMGA1-203ENST00000374116 SLC35B1P78383 322 aa11.08□□□□□ -0.64
HMGA1-203ENST00000374116 ERASQ7Z444 233 aa11.08□□□□□ -0.64
HMGA1-203ENST00000374116 TMEM86BQ8N661 226 aa11.08□□□□□ -0.64
HMGA1-203ENST00000374116 C7orf71A4D174 169 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 GNG5P63218 68 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 ARPC1AQ92747 370 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 FMC1Q96HJ9 113 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 Q9H3A6 140 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 C9orf118A6NHY6 69 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 COX8AP10176 69 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 HIST1H1EP10412 219 aaKnown RBP11.07□□□□□ -0.64
HMGA1-203ENST00000374116 ASPHD1Q5U4P2 390 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 C2orf91Q6ZV80 131 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 TTC9CQ8N5M4 171 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 OR5A1Q8NGJ0 315 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 GPR82Q96P67 336 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 OTORQ9NRC9 128 aa11.07□□□□□ -0.64
HMGA1-203ENST00000374116 hDV102S1A0JD36 115 aa11.06□□□□□ -0.64
HMGA1-203ENST00000374116 TMEM95Q3KNT9 176 aa11.06□□□□□ -0.64
HMGA1-203ENST00000374116 SAMD13Q5VXD3 122 aa11.06□□□□□ -0.64
HMGA1-203ENST00000374116 NUP35Q8NFH5 326 aa11.06□□□□□ -0.64
HMGA1-203ENST00000374116 SHANK2-AS3Q9BTD1 123 aa11.06□□□□□ -0.64
HMGA1-203ENST00000374116 CLEC5AQ9NY25 188 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms