RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 Q8N3U1 123 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 SYT8Q8NBV8 401 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 PCNPQ8WW12 178 aaKnown RBP9.34□□□□□ -0.91
VPS29-201ENST00000360579 TMEM37Q8WXS4 190 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 LINC00477Q96M19 166 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 C8orf49Q96NF6 230 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 GGACTQ9BVM4 153 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 FABP12A6NFH5 140 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 C1QBP02746 253 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 CRYGDP07320 174 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 OR4E1P0C645 316 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 UBE2MP61081 183 aaKnown RBP9.33□□□□□ -0.92
VPS29-201ENST00000360579 FHL2Q14192 279 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 SPCS2Q15005 226 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 Q6ZRG5 221 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 WFDC10BQ8IUB3 73 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 TOMM5Q8N4H5 51 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 MCFD2Q8NI22 146 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 DEDD2Q8WXF8 326 aa9.33□□□□□ -0.92
VPS29-201ENST00000360579 MRPL32Q9BYC8 188 aaKnown RBP9.33□□□□□ -0.92
VPS29-201ENST00000360579 TRGV4A0A0C4DH28 118 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 K7EQD1 137 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 RGS13O14921 159 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 TSC22D2O75157 780 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 CCNKO75909 580 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 ORM1P02763 201 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 GPX1P07203 203 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 NMBP08949 121 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 RNASE4P34096 147 aaKnown RBP9.32□□□□□ -0.92
VPS29-201ENST00000360579 TAS2R30P59541 319 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 BTN1A1Q13410 526 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 RAB31Q13636 194 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 DEFB104AQ8WTQ1 72 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 FAM19A4Q96LR4 140 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 ARPC5LQ9BPX5 153 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 SOSTQ9BQB4 213 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 DNAJC4Q9NNZ3 241 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 MRPL16Q9NX20 251 aaKnown RBP9.32□□□□□ -0.92
VPS29-201ENST00000360579 PRELID1Q9Y255 219 aa9.32□□□□□ -0.92
VPS29-201ENST00000360579 LRCOL1A6NCL2 159 aa9.31□□□□□ -0.92
VPS29-201ENST00000360579 E5RGE8 158 aa9.31□□□□□ -0.92
VPS29-201ENST00000360579 CRISP2P16562 243 aa9.31□□□□□ -0.92
VPS29-201ENST00000360579 CD300CQ08708 224 aa9.31□□□□□ -0.92
VPS29-201ENST00000360579 MORN5Q5VZ52 161 aa9.31□□□□□ -0.92
VPS29-201ENST00000360579 IQCF2Q8IXL9 164 aa9.31□□□□□ -0.92
VPS29-201ENST00000360579 OR1L4Q8NGR5 311 aa9.31□□□□□ -0.92
VPS29-201ENST00000360579 TXNDC17Q9BRA2 123 aa9.31□□□□□ -0.92
VPS29-201ENST00000360579 IGHV1OR15-1A0A075B7D0 117 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 TRAV5A0A0B4J249 113 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 TNFSF8P32971 234 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 ZNF415Q09FC8 603 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 ERCC8Q13216 396 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 C12orf45Q8N5I9 185 aaPredicted RBP9.3□□□□□ -0.92
VPS29-201ENST00000360579 Q8N814 137 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 DYNC2LI1Q8TCX1 351 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 TRIM63Q969Q1 353 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 PFDN5Q99471 154 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 MGST2Q99735 147 aa9.3□□□□□ -0.92
VPS29-201ENST00000360579 TRBV19A0A075B6N1 114 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 M0R3E3 92 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 SMIM18P0DKX4 95 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 GYPEP15421 78 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 CAMLGP49069 296 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 PDE6HQ13956 83 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 SH2D6Q7Z4S9 175 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 RAB2BQ8WUD1 216 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 AGPAT4-IT1Q9H0P7 198 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 TP53TG3Q9ULZ0 132 aa9.29□□□□□ -0.92
VPS29-201ENST00000360579 C9orf170A2RU37 121 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 C9JCJ5 164 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 SCGB1D2O95969 90 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 HIST1H1EP10412 219 aaKnown RBP9.28□□□□□ -0.92
VPS29-201ENST00000360579 PYDC2Q56P42 97 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 TMEM78Q5T7P6 136 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 C9orf47Q6ZRZ4 202 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 BCL7BQ9BQE9 202 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 SSBP4Q9BWG4 385 aaPredicted RBP9.28□□□□□ -0.92
VPS29-201ENST00000360579 SRRQ9GZT4 340 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 FAM30AQ9NZY2 134 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 RCL1Q9Y2P8 373 aaKnown RBP9.28□□□□□ -0.92
VPS29-201ENST00000360579 TIMM9Q9Y5J7 89 aa9.28□□□□□ -0.92
VPS29-201ENST00000360579 LRP1Q07954 4544 aaKnown RBP9.27□□□□□ -0.92
VPS29-201ENST00000360579 IGHV3-38A0A0C4DH36 116 aa9.27□□□□□ -0.93
VPS29-201ENST00000360579 H2AFB1P0C5Y9 115 aa9.27□□□□□ -0.93
VPS29-201ENST00000360579 H2AFB2P0C5Z0 115 aa9.27□□□□□ -0.93
VPS29-201ENST00000360579 ARL16Q0P5N6 197 aa9.27□□□□□ -0.93
VPS29-201ENST00000360579 OR10G4Q8NGN3 311 aa9.27□□□□□ -0.93
VPS29-201ENST00000360579 AAMDCQ9H7C9 122 aa9.27□□□□□ -0.93
VPS29-201ENST00000360579 TMEM14CQ9P0S9 112 aa9.27□□□□□ -0.93
VPS29-201ENST00000360579 TIRAPP58753 221 aa9.26□□□□□ -0.93
VPS29-201ENST00000360579 IAH1Q2TAA2 248 aaPredicted RBP9.26□□□□□ -0.93
VPS29-201ENST00000360579 LINC01556Q5JQF7 62 aa9.26□□□□□ -0.93
VPS29-201ENST00000360579 NRARPQ7Z6K4 114 aa9.26□□□□□ -0.93
VPS29-201ENST00000360579 ZFAND2AQ8N6M9 145 aa9.26□□□□□ -0.93
VPS29-201ENST00000360579 RASL10AQ92737 203 aa9.26□□□□□ -0.93
VPS29-201ENST00000360579 ZNF479Q96JC4 524 aa9.26□□□□□ -0.93
VPS29-201ENST00000360579 MRPS26Q9BYN8 205 aaKnown RBP9.26□□□□□ -0.93
VPS29-201ENST00000360579 SLIRPQ9GZT3 109 aaKnown RBP9.26□□□□□ -0.93
VPS29-201ENST00000360579 TRBV7-9A0A0J9YWB2 115 aa9.25□□□□□ -0.93
VPS29-201ENST00000360579 C7orf66A4D0T2 115 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms