RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ADCYAP1P18509 176 aa11.77□□□□□ -0.52
COL17A1-201ENST00000353479 PHLDA1Q8WV24 401 aaPredicted RBP11.77□□□□□ -0.52
COL17A1-201ENST00000353479 ANKHD1Q8IWZ3 2542 aaKnown RBP11.77□□□□□ -0.52
COL17A1-201ENST00000353479 MS4A6AQ9H2W1 248 aa11.77□□□□□ -0.52
COL17A1-201ENST00000353479 C19orf84I3L1E1 186 aa11.77□□□□□ -0.53
COL17A1-201ENST00000353479 CFHR3Q02985 330 aa11.77□□□□□ -0.53
COL17A1-201ENST00000353479 MRPL16Q9NX20 251 aaKnown RBP11.77□□□□□ -0.53
COL17A1-201ENST00000353479 VCYO14598 125 aa11.77□□□□□ -0.53
COL17A1-201ENST00000353479 ZNF491Q8N8L2 437 aa11.77□□□□□ -0.53
COL17A1-201ENST00000353479 TMEM14CQ9P0S9 112 aa11.77□□□□□ -0.53
COL17A1-201ENST00000353479 IGKCP01834 107 aa11.77□□□□□ -0.53
COL17A1-201ENST00000353479 APOMO95445 188 aa11.76□□□□□ -0.53
COL17A1-201ENST00000353479 CD300EQ496F6 205 aaPredicted RBP11.76□□□□□ -0.53
COL17A1-201ENST00000353479 IGHV7-81A0A0B4J1V7 117 aa11.76□□□□□ -0.53
COL17A1-201ENST00000353479 DNAL4O96015 105 aa11.76□□□□□ -0.53
COL17A1-201ENST00000353479 GUSBP1Q15486 140 aa11.76□□□□□ -0.53
COL17A1-201ENST00000353479 TSSC4Q9Y5U2 329 aaPredicted RBP11.76□□□□□ -0.53
COL17A1-201ENST00000353479 AMBPP02760 352 aa11.75□□□□□ -0.53
COL17A1-201ENST00000353479 NPBQ8NG41 125 aa11.75□□□□□ -0.53
COL17A1-201ENST00000353479 HOXD3P31249 432 aaPredicted RBP11.75□□□□□ -0.53
COL17A1-201ENST00000353479 HIST1H2BLQ99880 126 aa11.75□□□□□ -0.53
COL17A1-201ENST00000353479 A0A0U1RRA0 63 aa11.75□□□□□ -0.53
COL17A1-201ENST00000353479 TMEM213A2RRL7 107 aa11.75□□□□□ -0.53
COL17A1-201ENST00000353479 MCRIP2Q9BUT9 160 aaKnown RBP11.75□□□□□ -0.53
COL17A1-201ENST00000353479 GFRA4Q9GZZ7 299 aa11.75□□□□□ -0.53
COL17A1-201ENST00000353479 ZNF492Q9P255 531 aa11.75□□□□□ -0.53
COL17A1-201ENST00000353479 OR5A1Q8NGJ0 315 aa11.74□□□□□ -0.53
COL17A1-201ENST00000353479 CDKN1BP46527 198 aa11.74□□□□□ -0.53
COL17A1-201ENST00000353479 Q8N7P7 452 aa11.74□□□□□ -0.53
COL17A1-201ENST00000353479 PRR25Q96S07 402 aa11.74□□□□□ -0.53
COL17A1-201ENST00000353479 C11orf68Q9H3H3 251 aaKnown RBP11.74□□□□□ -0.53
COL17A1-201ENST00000353479 PLCE1Q9P212 2302 aa11.74□□□□□ -0.53
COL17A1-201ENST00000353479 FXYD5Q96DB9 178 aa11.74□□□□□ -0.53
COL17A1-201ENST00000353479 IL15RAQ13261 267 aa11.74□□□□□ -0.53
COL17A1-201ENST00000353479 PIEZO1Q92508 2521 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 LGALS1P09382 135 aaKnown RBP11.73□□□□□ -0.53
COL17A1-201ENST00000353479 NCKAP5O14513 1909 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 IGHV1OR15-1A0A075B7D0 117 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 TRAV9-2A0A087WT02 112 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 LINC01549A6NIU2 74 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 CCL24O00175 119 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 PRR20EP86478 221 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 PRR20CP86479 221 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 PRR20DP86480 221 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 PRR20BP86481 221 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 PRR20AP86496 221 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 C22orf34Q6ZV56 151 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 TMEM256Q8N2U0 113 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 C1orf159Q96HA4 380 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 IGHV3-16A0A0C4DH30 117 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 TRBV7-9A0A0J9YWB2 115 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 NCOR2Q9Y618 2525 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 OR2K2Q8NGT1 345 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 C17orf77Q96MU5 243 aa11.73□□□□□ -0.53
COL17A1-201ENST00000353479 HIST3H2BBQ8N257 126 aa11.72□□□□□ -0.53
COL17A1-201ENST00000353479 ZNF815PA8K554 130 aa11.72□□□□□ -0.53
COL17A1-201ENST00000353479 ANXA2RQ3ZCQ2 193 aa11.72□□□□□ -0.53
COL17A1-201ENST00000353479 TEX43Q6ZNM6 134 aa11.72□□□□□ -0.53
COL17A1-201ENST00000353479 TMEM158Q8WZ71 300 aa11.72□□□□□ -0.53
COL17A1-201ENST00000353479 SMPXQ9UHP9 88 aa11.72□□□□□ -0.53
COL17A1-201ENST00000353479 DAD1P61803 113 aa11.72□□□□□ -0.53
COL17A1-201ENST00000353479 ALPK3Q96L96 1907 aa11.72□□□□□ -0.53
COL17A1-201ENST00000353479 F5H768 121 aa11.71□□□□□ -0.53
COL17A1-201ENST00000353479 HLA-DMBP28068 263 aa11.71□□□□□ -0.53
COL17A1-201ENST00000353479 Q8N9W7 124 aa11.71□□□□□ -0.53
COL17A1-201ENST00000353479 UBE2CO00762 179 aa11.71□□□□□ -0.53
COL17A1-201ENST00000353479 TRAV2A0A0B4J234 112 aa11.71□□□□□ -0.54
COL17A1-201ENST00000353479 SLURP1P55000 103 aa11.71□□□□□ -0.54
COL17A1-201ENST00000353479 C10orf142B7Z368 130 aa11.71□□□□□ -0.54
COL17A1-201ENST00000353479 PLP1P60201 277 aa11.71□□□□□ -0.54
COL17A1-201ENST00000353479 FOXE3Q13461 319 aa11.71□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE12BA1L429 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE7O76087 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE12FP0CL80 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE12GP0CL81 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE12IP0CL82 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 AZU1P20160 251 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 APOC4P55056 127 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 C5orf56Q8N8D9 126 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 F6UB75 175 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE12JA6NER3 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 TNFRSF6BO95407 300 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 IGLV1-47P01700 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE1Q13065 139 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE4Q13068 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE5Q13069 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 GAGE13Q4V321 117 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 DMRTA1Q5VZB9 504 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 ASPHD1Q5U4P2 390 aa11.7□□□□□ -0.54
COL17A1-201ENST00000353479 LOC105371267A0A1B0GV96 52 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 TRPT1Q86TN4 253 aaKnown RBP11.69□□□□□ -0.54
COL17A1-201ENST00000353479 PRSS46E5RG02 174 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 GSN-AS1Q9NRJ2 163 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 RBMY1BA6NDE4 496 aaKnown RBP11.69□□□□□ -0.54
COL17A1-201ENST00000353479 RBMY1EA6NEQ0 496 aaKnown RBP11.69□□□□□ -0.54
COL17A1-201ENST00000353479 RBMY1DP0C7P1 496 aaKnown RBP11.69□□□□□ -0.54
COL17A1-201ENST00000353479 RBMY1A1P0DJD3 496 aaKnown RBP11.69□□□□□ -0.54
COL17A1-201ENST00000353479 RBMY1CP0DJD4 496 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 CKS1BP61024 79 aa11.69□□□□□ -0.54
COL17A1-201ENST00000353479 NCOA6Q14686 2063 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms