RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 C20orf144Q9BQM9 153 aa10.96□□□□□ -0.65
VAPA-201ENST00000340541 Q9H3A6 140 aa10.96□□□□□ -0.65
VAPA-201ENST00000340541 PLA2G2EQ9NZK7 142 aa10.96□□□□□ -0.65
VAPA-201ENST00000340541 FRAS1Q86XX4 4008 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 A0A1W2PPV4 95 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 ARPC5O15511 151 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 LEPP41159 167 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 SERF2P84101 59 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 LINC00477Q96M19 166 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 VGLL1Q99990 258 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 APLNQ9ULZ1 77 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 VPS13DQ5THJ4 4388 aa10.95□□□□□ -0.66
VAPA-201ENST00000340541 TEX48A0A1B0GUV7 120 aa10.94□□□□□ -0.66
VAPA-201ENST00000340541 KLLNB2CW77 178 aa10.94□□□□□ -0.66
VAPA-201ENST00000340541 H7BYZ3 331 aa10.94□□□□□ -0.66
VAPA-201ENST00000340541 HMGB3O15347 200 aaKnown RBP10.94□□□□□ -0.66
VAPA-201ENST00000340541 PQLC2Q6ZP29 291 aa10.94□□□□□ -0.66
VAPA-201ENST00000340541 NIPSNAP3BQ9BS92 247 aa10.94□□□□□ -0.66
VAPA-201ENST00000340541 CYTL1Q9NRR1 136 aa10.94□□□□□ -0.66
VAPA-201ENST00000340541 DEFB131BA0A096LNP1 70 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 IGLL5B9A064 214 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 J3KRW8 73 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 STAG3L2P0CL84 134 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 STAG3L3P0CL85 134 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 ARL14EPLP0DKL9 152 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 CRISP2P16562 243 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 CDC34P49427 236 aaPredicted RBP10.93□□□□□ -0.66
VAPA-201ENST00000340541 ZFAND2AQ8N6M9 145 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 OR11H4Q8NGC9 324 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 RNASE8Q8TDE3 154 aaKnown RBP10.93□□□□□ -0.66
VAPA-201ENST00000340541 RAB24Q969Q5 203 aa10.93□□□□□ -0.66
VAPA-201ENST00000340541 BORCS7-ASMTA0A0B4J1R7 106 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 TRAV12-3A0A0B4J271 114 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 MBP02144 154 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 SLC25A5P05141 298 aaKnown RBP10.92□□□□□ -0.66
VAPA-201ENST00000340541 CD300CQ08708 224 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 PRR9Q5T870 116 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 SSX7Q7RTT5 188 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 SUN5Q8TC36 379 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 GNPNAT1Q96EK6 184 aaPredicted RBP10.92□□□□□ -0.66
VAPA-201ENST00000340541 OTORQ9NRC9 128 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 ZNF492Q9P255 531 aa10.92□□□□□ -0.66
VAPA-201ENST00000340541 IGHV4-4A0A075B6R2 117 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 C7orf71A4D174 169 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 RBAKDNA6NC62 111 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 LYRM9A8MSI8 78 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 DIRC3C9JPN6 131 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 TAAR5O14804 337 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 ZNF324O75467 553 aaPredicted RBP10.91□□□□□ -0.66
VAPA-201ENST00000340541 NMBP08949 121 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 HTN1P15515 57 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 BTN1A1Q13410 526 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 TMEM78Q5T7P6 136 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 ZNF493Q6ZR52 646 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 Q8TAT8 98 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 TMEM263Q8WUH6 116 aaKnown RBP10.91□□□□□ -0.66
VAPA-201ENST00000340541 C16orf74Q96GX8 76 aa10.91□□□□□ -0.66
VAPA-201ENST00000340541 PGPA6NDG6 321 aa10.9□□□□□ -0.66
VAPA-201ENST00000340541 CSN1S1P47710 185 aa10.9□□□□□ -0.66
VAPA-201ENST00000340541 ZNF138P52744 262 aa10.9□□□□□ -0.66
VAPA-201ENST00000340541 ZNF345Q14585 488 aa10.9□□□□□ -0.66
VAPA-201ENST00000340541 ZNF726P1Q15940 193 aa10.9□□□□□ -0.66
VAPA-201ENST00000340541 KCNRGQ8N5I3 272 aa10.9□□□□□ -0.66
VAPA-201ENST00000340541 RXFP4Q8TDU9 374 aa10.9□□□□□ -0.66
VAPA-201ENST00000340541 TRBV7-9A0A0J9YWB2 115 aa10.89□□□□□ -0.67
VAPA-201ENST00000340541 HMSDA8MTL9 139 aa10.89□□□□□ -0.67
VAPA-201ENST00000340541 GCHFRP30047 84 aa10.89□□□□□ -0.67
VAPA-201ENST00000340541 DAD1P61803 113 aa10.89□□□□□ -0.67
VAPA-201ENST00000340541 Q6ZQT7 251 aa10.89□□□□□ -0.67
VAPA-201ENST00000340541 HYLS1Q96M11 299 aa10.89□□□□□ -0.67
VAPA-201ENST00000340541 PYGO2Q9BRQ0 406 aa10.89□□□□□ -0.67
VAPA-201ENST00000340541 ACTR3CQ9C0K3 210 aaPredicted RBP10.89□□□□□ -0.67
VAPA-201ENST00000340541 GPX1P07203 203 aa10.88□□□□□ -0.67
VAPA-201ENST00000340541 RNASE4P34096 147 aaKnown RBP10.88□□□□□ -0.67
VAPA-201ENST00000340541 ARL6IP6Q8N6S5 226 aa10.88□□□□□ -0.67
VAPA-201ENST00000340541 LINC00467Q9BRT7 94 aa10.88□□□□□ -0.67
VAPA-201ENST00000340541 KRTAP17-1Q9BYP8 105 aa10.88□□□□□ -0.67
VAPA-201ENST00000340541 CXorf1O96002 111 aa10.87□□□□□ -0.67
VAPA-201ENST00000340541 DEFB130BP0DP73 79 aa10.87□□□□□ -0.67
VAPA-201ENST00000340541 DEFB130AP0DP74 79 aa10.87□□□□□ -0.67
VAPA-201ENST00000340541 Q6ZNX1 250 aa10.87□□□□□ -0.67
VAPA-201ENST00000340541 LINC00612Q8N6U2 182 aa10.87□□□□□ -0.67
VAPA-201ENST00000340541 TMED6Q8WW62 240 aa10.87□□□□□ -0.67
VAPA-201ENST00000340541 ST6GAL2Q96JF0 529 aa10.87□□□□□ -0.67
VAPA-201ENST00000340541 ARPC5LQ9BPX5 153 aa10.87□□□□□ -0.67
VAPA-201ENST00000340541 NOP10Q9NPE3 64 aaKnown RBP10.87□□□□□ -0.67
VAPA-201ENST00000340541 TIMM8BQ9Y5J9 83 aaPredicted RBP10.87□□□□□ -0.67
VAPA-201ENST00000340541 CTXND1A0A1B0GTU2 59 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 HTN3P15516 51 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 GNG5P63218 68 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 FAM74A1Q5RGS3 127 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 GOLT1AQ6ZVE7 132 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 CCDC28AQ8IWP9 274 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 C11orf72Q8NBR9 251 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 CMTM2Q8TAZ6 248 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 RPH3ALQ9UNE2 315 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 LENEPQ9Y5L5 61 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 DNAH6Q9C0G6 4158 aa10.86□□□□□ -0.67
VAPA-201ENST00000340541 GGTLC3B5MD39 225 aa10.85□□□□□ -0.67
VAPA-201ENST00000340541 ANXA2RQ3ZCQ2 193 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms